Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
HOXD3P31249 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC12.57□□□□□ -0.4
HOXD3P31249 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 FOXO1B-201ENST00000504678 1527 ntBASIC12.57□□□□□ -0.4
HOXD3P31249 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXD3P31249 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
HOXD3P31249 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXD3P31249 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HOXD3P31249 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC12.56□□□□□ -0.4
HOXD3P31249 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC12.56□□□□□ -0.4
HOXD3P31249 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HOXD3P31249 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXD3P31249 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
HOXD3P31249 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXD3P31249 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC12.56□□□□□ -0.4
HOXD3P31249 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
HOXD3P31249 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXD3P31249 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXD3P31249 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC12.56□□□□□ -0.4
HOXD3P31249 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXD3P31249 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
HOXD3P31249 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXD3P31249 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC12.56□□□□□ -0.4
HOXD3P31249 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HOXD3P31249 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC12.56□□□□□ -0.4
HOXD3P31249 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC12.56□□□□□ -0.4
HOXD3P31249 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC12.56□□□□□ -0.4
HOXD3P31249 RNA5SP410-201ENST00000516285 106 ntBASIC12.56□□□□□ -0.4
HOXD3P31249 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC12.56□□□□□ -0.4
HOXD3P31249 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC12.56□□□□□ -0.4
HOXD3P31249 RARRES2P9-201ENST00000565168 469 ntBASIC12.56□□□□□ -0.4
HOXD3P31249 FHL2-212ENST00000607522 759 ntTSL 2 BASIC12.56□□□□□ -0.4
HOXD3P31249 AC073592.8-201ENST00000624126 511 ntBASIC12.56□□□□□ -0.4
HOXD3P31249 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC12.56□□□□□ -0.4
HOXD3P31249 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
HOXD3P31249 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC12.56□□□□□ -0.4
HOXD3P31249 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXD3P31249 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HOXD3P31249 U82695.1-201ENST00000635752 1889 ntBASIC12.56□□□□□ -0.4
HOXD3P31249 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXD3P31249 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXD3P31249 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXD3P31249 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXD3P31249 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC12.56□□□□□ -0.4
HOXD3P31249 ALOX12P2-203ENST00000570921 1945 ntBASIC12.56□□□□□ -0.4
HOXD3P31249 GOLGA2P9-201ENST00000596977 1937 ntBASIC12.56□□□□□ -0.4
HOXD3P31249 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXD3P31249 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXD3P31249 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXD3P31249 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXD3P31249 AC009053.2-201ENST00000563701 2365 ntBASIC12.56□□□□□ -0.4
HOXD3P31249 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXD3P31249 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXD3P31249 AP3S2-216ENST00000617003 1561 ntBASIC12.56□□□□□ -0.4
HOXD3P31249 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC12.56□□□□□ -0.4
HOXD3P31249 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXD3P31249 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HOXD3P31249 AC005052.1-201ENST00000625181 2492 ntBASIC12.55□□□□□ -0.4
HOXD3P31249 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC12.55□□□□□ -0.4
HOXD3P31249 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
HOXD3P31249 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC12.55□□□□□ -0.4
HOXD3P31249 AC100757.3-201ENST00000622361 1406 ntBASIC12.55□□□□□ -0.4
HOXD3P31249 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXD3P31249 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HOXD3P31249 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
HOXD3P31249 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXD3P31249 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXD3P31249 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
HOXD3P31249 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXD3P31249 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC12.55□□□□□ -0.4
HOXD3P31249 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC12.55□□□□□ -0.4
HOXD3P31249 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
HOXD3P31249 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXD3P31249 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXD3P31249 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXD3P31249 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXD3P31249 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXD3P31249 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
HOXD3P31249 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXD3P31249 HNRNPA3P1-201ENST00000401429 1139 ntBASIC12.55□□□□□ -0.4
HOXD3P31249 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC12.55□□□□□ -0.4
HOXD3P31249 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC12.55□□□□□ -0.4
HOXD3P31249 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC12.55□□□□□ -0.4
HOXD3P31249 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXD3P31249 HNRNPA3P5-201ENST00000455201 833 ntBASIC12.55□□□□□ -0.4
HOXD3P31249 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC12.55□□□□□ -0.4
HOXD3P31249 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HOXD3P31249 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC12.55□□□□□ -0.4
HOXD3P31249 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC12.55□□□□□ -0.4
HOXD3P31249 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC12.55□□□□□ -0.4
HOXD3P31249 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC12.55□□□□□ -0.4
HOXD3P31249 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC12.55□□□□□ -0.4
HOXD3P31249 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
HOXD3P31249 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC12.55□□□□□ -0.4
HOXD3P31249 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
HOXD3P31249 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HOXD3P31249 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC12.55□□□□□ -0.4
HOXD3P31249 AL589702.1-201ENST00000641229 1509 ntBASIC12.55□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms