Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SMARCA1P28370 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SMARCA1P28370 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
SMARCA1P28370 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SMARCA1P28370 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.55
SMARCA1P28370 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SMARCA1P28370 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
SMARCA1P28370 AC124067.4-201ENST00000519691 2379 ntBASIC18.52■□□□□ 0.55
SMARCA1P28370 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC18.51■□□□□ 0.55
SMARCA1P28370 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC18.51■□□□□ 0.55
SMARCA1P28370 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC18.51■□□□□ 0.55
SMARCA1P28370 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCA1P28370 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC18.51■□□□□ 0.55
SMARCA1P28370 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC18.51■□□□□ 0.55
SMARCA1P28370 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCA1P28370 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCA1P28370 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCA1P28370 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC18.51■□□□□ 0.55
SMARCA1P28370 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCA1P28370 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC18.51■□□□□ 0.55
SMARCA1P28370 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCA1P28370 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
SMARCA1P28370 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC18.51■□□□□ 0.55
SMARCA1P28370 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCA1P28370 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
SMARCA1P28370 AL512638.1-201ENST00000457493 794 ntBASIC18.51■□□□□ 0.55
SMARCA1P28370 LINC02447-202ENST00000501888 2146 ntBASIC18.51■□□□□ 0.55
SMARCA1P28370 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC18.51■□□□□ 0.55
SMARCA1P28370 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC18.51■□□□□ 0.55
SMARCA1P28370 EHF-205ENST00000527935 557 ntTSL 2 BASIC18.51■□□□□ 0.55
SMARCA1P28370 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCA1P28370 PRR29-204ENST00000577953 565 ntTSL 4 BASIC18.51■□□□□ 0.55
SMARCA1P28370 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCA1P28370 SPIB-207ENST00000597855 564 ntTSL 4 BASIC18.51■□□□□ 0.55
SMARCA1P28370 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCA1P28370 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC18.51■□□□□ 0.55
SMARCA1P28370 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCA1P28370 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCA1P28370 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
SMARCA1P28370 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC18.51■□□□□ 0.55
SMARCA1P28370 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCA1P28370 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCA1P28370 AC022144.1-201ENST00000602255 1580 ntBASIC18.51■□□□□ 0.55
SMARCA1P28370 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCA1P28370 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
SMARCA1P28370 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCA1P28370 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCA1P28370 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCA1P28370 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC18.5■□□□□ 0.55
SMARCA1P28370 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCA1P28370 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.5■□□□□ 0.55
SMARCA1P28370 Z97205.2-201ENST00000564697 1639 ntBASIC18.5■□□□□ 0.55
SMARCA1P28370 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCA1P28370 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCA1P28370 AZGP1P1-201ENST00000411909 902 ntBASIC18.5■□□□□ 0.55
SMARCA1P28370 MRPS18AP1-201ENST00000414458 589 ntBASIC18.5■□□□□ 0.55
SMARCA1P28370 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC18.5■□□□□ 0.55
SMARCA1P28370 BCRP1-201ENST00000444246 691 ntBASIC18.5■□□□□ 0.55
SMARCA1P28370 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC18.5■□□□□ 0.55
SMARCA1P28370 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC18.5■□□□□ 0.55
SMARCA1P28370 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCA1P28370 INGX-202ENST00000489074 768 ntBASIC18.5■□□□□ 0.55
SMARCA1P28370 SDHAP3-202ENST00000515467 728 ntBASIC18.5■□□□□ 0.55
SMARCA1P28370 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC18.5■□□□□ 0.55
SMARCA1P28370 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
SMARCA1P28370 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC18.5■□□□□ 0.55
SMARCA1P28370 AC011467.4-201ENST00000594891 528 ntBASIC18.5■□□□□ 0.55
SMARCA1P28370 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCA1P28370 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC18.5■□□□□ 0.55
SMARCA1P28370 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.5■□□□□ 0.55
SMARCA1P28370 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC18.5■□□□□ 0.55
SMARCA1P28370 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCA1P28370 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCA1P28370 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC18.5■□□□□ 0.55
SMARCA1P28370 AC099398.1-201ENST00000567919 2776 ntBASIC18.5■□□□□ 0.55
SMARCA1P28370 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC18.5■□□□□ 0.55
SMARCA1P28370 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCA1P28370 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCA1P28370 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCA1P28370 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCA1P28370 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC18.5■□□□□ 0.55
SMARCA1P28370 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC18.5■□□□□ 0.55
SMARCA1P28370 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC18.5■□□□□ 0.55
SMARCA1P28370 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.49■□□□□ 0.55
SMARCA1P28370 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC18.49■□□□□ 0.55
SMARCA1P28370 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCA1P28370 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC18.49■□□□□ 0.55
SMARCA1P28370 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
SMARCA1P28370 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC18.49■□□□□ 0.55
SMARCA1P28370 PGR-209ENST00000617858 2816 ntTSL 5 BASIC18.49■□□□□ 0.55
SMARCA1P28370 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCA1P28370 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCA1P28370 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCA1P28370 AC136604.1-201ENST00000418535 575 ntBASIC18.49■□□□□ 0.55
SMARCA1P28370 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC18.49■□□□□ 0.55
SMARCA1P28370 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC18.49■□□□□ 0.55
SMARCA1P28370 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCA1P28370 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC18.49■□□□□ 0.55
SMARCA1P28370 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC18.49■□□□□ 0.55
SMARCA1P28370 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms