Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
BDNFP23560 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
BDNFP23560 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
BDNFP23560 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
BDNFP23560 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
BDNFP23560 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
BDNFP23560 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC17.06■□□□□ 0.32
BDNFP23560 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
BDNFP23560 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC17.06■□□□□ 0.32
BDNFP23560 AC002472.2-201ENST00000442739 958 ntBASIC17.06■□□□□ 0.32
BDNFP23560 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC17.06■□□□□ 0.32
BDNFP23560 RN7SL204P-201ENST00000582831 262 ntBASIC17.06■□□□□ 0.32
BDNFP23560 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC17.06■□□□□ 0.32
BDNFP23560 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.06■□□□□ 0.32
BDNFP23560 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.06■□□□□ 0.32
BDNFP23560 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
BDNFP23560 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC17.06■□□□□ 0.32
BDNFP23560 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
BDNFP23560 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC17.06■□□□□ 0.32
BDNFP23560 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
BDNFP23560 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.06■□□□□ 0.32
BDNFP23560 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
BDNFP23560 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
BDNFP23560 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
BDNFP23560 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.06■□□□□ 0.32
BDNFP23560 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
BDNFP23560 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
BDNFP23560 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
BDNFP23560 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
BDNFP23560 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
BDNFP23560 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC17.05■□□□□ 0.32
BDNFP23560 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.05■□□□□ 0.32
BDNFP23560 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
BDNFP23560 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
BDNFP23560 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC17.05■□□□□ 0.32
BDNFP23560 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
BDNFP23560 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
BDNFP23560 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
BDNFP23560 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC17.05■□□□□ 0.32
BDNFP23560 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC17.05■□□□□ 0.32
BDNFP23560 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
BDNFP23560 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
BDNFP23560 PCDH8P1-201ENST00000428983 2773 ntBASIC17.05■□□□□ 0.32
BDNFP23560 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
BDNFP23560 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
BDNFP23560 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
BDNFP23560 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
BDNFP23560 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
BDNFP23560 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC17.05■□□□□ 0.32
BDNFP23560 SPDYE17-201ENST00000412399 783 ntBASIC17.05■□□□□ 0.32
BDNFP23560 AC009477.1-201ENST00000452936 217 ntBASIC17.05■□□□□ 0.32
BDNFP23560 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.05■□□□□ 0.32
BDNFP23560 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
BDNFP23560 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC17.05■□□□□ 0.32
BDNFP23560 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
BDNFP23560 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC17.05■□□□□ 0.32
BDNFP23560 AL512361.1-201ENST00000554200 418 ntBASIC17.05■□□□□ 0.32
BDNFP23560 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC17.05■□□□□ 0.32
BDNFP23560 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC17.05■□□□□ 0.32
BDNFP23560 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC17.05■□□□□ 0.32
BDNFP23560 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.05■□□□□ 0.32
BDNFP23560 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
BDNFP23560 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.05■□□□□ 0.32
BDNFP23560 CYP4F24P-201ENST00000586049 1580 ntBASIC17.05■□□□□ 0.32
BDNFP23560 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC17.05■□□□□ 0.32
BDNFP23560 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC17.05■□□□□ 0.32
BDNFP23560 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
BDNFP23560 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC17.05■□□□□ 0.32
BDNFP23560 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
BDNFP23560 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC17.05■□□□□ 0.32
BDNFP23560 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
BDNFP23560 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.05■□□□□ 0.32
BDNFP23560 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
BDNFP23560 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
BDNFP23560 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.32
BDNFP23560 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.04■□□□□ 0.32
BDNFP23560 AC006449.6-201ENST00000612330 2296 ntBASIC17.04■□□□□ 0.32
BDNFP23560 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
BDNFP23560 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
BDNFP23560 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
BDNFP23560 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
BDNFP23560 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC17.04■□□□□ 0.32
BDNFP23560 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
BDNFP23560 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
BDNFP23560 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
BDNFP23560 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
BDNFP23560 KLK8-202ENST00000320838 456 ntTSL 5 BASIC17.04■□□□□ 0.32
BDNFP23560 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
BDNFP23560 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
BDNFP23560 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
BDNFP23560 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC17.04■□□□□ 0.32
BDNFP23560 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
BDNFP23560 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.04■□□□□ 0.32
BDNFP23560 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC17.04■□□□□ 0.32
BDNFP23560 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC17.04■□□□□ 0.32
BDNFP23560 AC009407.1-201ENST00000568958 598 ntBASIC17.04■□□□□ 0.32
BDNFP23560 AC138761.1-201ENST00000584393 385 ntBASIC17.04■□□□□ 0.32
BDNFP23560 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC17.04■□□□□ 0.32
BDNFP23560 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC17.04■□□□□ 0.32
BDNFP23560 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms