Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 AC093520.2-201ENST00000561830 333 ntBASIC15.98■□□□□ 0.15
CDH3P22223 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.98■□□□□ 0.15
CDH3P22223 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDH3P22223 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDH3P22223 AC093028.1-201ENST00000622998 982 ntBASIC15.98■□□□□ 0.15
CDH3P22223 AC009093.7-201ENST00000623853 1223 ntBASIC15.98■□□□□ 0.15
CDH3P22223 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC15.98■□□□□ 0.15
CDH3P22223 LINC00628-201ENST00000628516 1289 ntBASIC15.98■□□□□ 0.15
CDH3P22223 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH3P22223 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH3P22223 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH3P22223 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
CDH3P22223 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH3P22223 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH3P22223 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH3P22223 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH3P22223 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDH3P22223 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC15.98■□□□□ 0.15
CDH3P22223 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH3P22223 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
CDH3P22223 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH3P22223 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDH3P22223 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH3P22223 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.97■□□□□ 0.15
CDH3P22223 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC15.97■□□□□ 0.15
CDH3P22223 AC005915.1-201ENST00000624912 2018 ntBASIC15.97■□□□□ 0.15
CDH3P22223 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH3P22223 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH3P22223 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH3P22223 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
CDH3P22223 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDH3P22223 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
CDH3P22223 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC15.97■□□□□ 0.15
CDH3P22223 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
CDH3P22223 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH3P22223 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDH3P22223 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH3P22223 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH3P22223 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH3P22223 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH3P22223 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDH3P22223 AL139400.1-201ENST00000366220 510 ntBASIC15.97■□□□□ 0.15
CDH3P22223 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.97■□□□□ 0.15
CDH3P22223 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.97■□□□□ 0.15
CDH3P22223 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.97■□□□□ 0.15
CDH3P22223 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC15.97■□□□□ 0.15
CDH3P22223 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.97■□□□□ 0.15
CDH3P22223 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDH3P22223 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC15.97■□□□□ 0.15
CDH3P22223 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.97■□□□□ 0.15
CDH3P22223 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH3P22223 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
CDH3P22223 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
CDH3P22223 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15.97■□□□□ 0.15
CDH3P22223 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC15.97■□□□□ 0.15
CDH3P22223 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC15.97■□□□□ 0.15
CDH3P22223 AC027796.2-201ENST00000575326 344 ntBASIC15.97■□□□□ 0.15
CDH3P22223 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC15.97■□□□□ 0.15
CDH3P22223 AC027307.2-201ENST00000591252 911 ntBASIC15.97■□□□□ 0.15
CDH3P22223 RPS15-212ENST00000593052 629 ntTSL 2 BASIC15.97■□□□□ 0.15
CDH3P22223 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDH3P22223 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
CDH3P22223 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC15.97■□□□□ 0.15
CDH3P22223 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH3P22223 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH3P22223 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDH3P22223 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC15.97■□□□□ 0.15
CDH3P22223 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH3P22223 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH3P22223 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDH3P22223 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH3P22223 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH3P22223 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
CDH3P22223 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.96■□□□□ 0.15
CDH3P22223 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.96■□□□□ 0.15
CDH3P22223 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
CDH3P22223 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH3P22223 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.96■□□□□ 0.15
CDH3P22223 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH3P22223 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH3P22223 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.96■□□□□ 0.15
CDH3P22223 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
CDH3P22223 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH3P22223 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC15.96■□□□□ 0.15
CDH3P22223 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CDH3P22223 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH3P22223 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH3P22223 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC15.96■□□□□ 0.15
CDH3P22223 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH3P22223 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH3P22223 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH3P22223 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH3P22223 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC15.96■□□□□ 0.15
CDH3P22223 AL645939.2-201ENST00000427340 991 ntBASIC15.96■□□□□ 0.15
CDH3P22223 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.96■□□□□ 0.15
CDH3P22223 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH3P22223 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC15.96■□□□□ 0.15
CDH3P22223 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH3P22223 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CDH3P22223 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms