Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC112504.1-201ENST00000623415 1841 ntBASIC15.98■□□□□ 0.15
VPS4BO75351 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS4BO75351 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS4BO75351 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
VPS4BO75351 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VPS4BO75351 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS4BO75351 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS4BO75351 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS4BO75351 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
VPS4BO75351 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
VPS4BO75351 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC15.97■□□□□ 0.15
VPS4BO75351 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.97■□□□□ 0.15
VPS4BO75351 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
VPS4BO75351 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
VPS4BO75351 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
VPS4BO75351 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.97■□□□□ 0.15
VPS4BO75351 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.97■□□□□ 0.15
VPS4BO75351 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC15.97■□□□□ 0.15
VPS4BO75351 WBP2-203ENST00000433525 928 ntTSL 2 BASIC15.97■□□□□ 0.15
VPS4BO75351 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC15.97■□□□□ 0.15
VPS4BO75351 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC15.97■□□□□ 0.15
VPS4BO75351 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC15.97■□□□□ 0.15
VPS4BO75351 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC15.97■□□□□ 0.15
VPS4BO75351 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC15.97■□□□□ 0.15
VPS4BO75351 AC004449.1-201ENST00000564240 433 ntBASIC15.97■□□□□ 0.15
VPS4BO75351 CYGB-205ENST00000590175 830 ntTSL 3 BASIC15.97■□□□□ 0.15
VPS4BO75351 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC15.97■□□□□ 0.15
VPS4BO75351 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC15.97■□□□□ 0.15
VPS4BO75351 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.97■□□□□ 0.15
VPS4BO75351 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS4BO75351 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
VPS4BO75351 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4BO75351 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC15.96■□□□□ 0.15
VPS4BO75351 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4BO75351 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC15.96■□□□□ 0.15
VPS4BO75351 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC15.96■□□□□ 0.15
VPS4BO75351 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4BO75351 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.96■□□□□ 0.15
VPS4BO75351 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4BO75351 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4BO75351 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4BO75351 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
VPS4BO75351 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
VPS4BO75351 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4BO75351 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.96■□□□□ 0.15
VPS4BO75351 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.96■□□□□ 0.15
VPS4BO75351 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4BO75351 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4BO75351 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4BO75351 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
VPS4BO75351 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC15.96■□□□□ 0.15
VPS4BO75351 TSEN15P1-201ENST00000423257 515 ntBASIC15.96■□□□□ 0.15
VPS4BO75351 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4BO75351 GREM1-201ENST00000560677 623 ntTSL 4 BASIC15.96■□□□□ 0.15
VPS4BO75351 AC018845.2-201ENST00000568326 409 ntBASIC15.96■□□□□ 0.15
VPS4BO75351 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC15.96■□□□□ 0.15
VPS4BO75351 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
VPS4BO75351 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC15.96■□□□□ 0.15
VPS4BO75351 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
VPS4BO75351 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4BO75351 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4BO75351 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS4BO75351 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
VPS4BO75351 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.14
VPS4BO75351 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.96■□□□□ 0.14
VPS4BO75351 AC092384.3-202ENST00000564646 2873 ntBASIC15.96■□□□□ 0.14
VPS4BO75351 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
VPS4BO75351 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.14
VPS4BO75351 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.95■□□□□ 0.14
VPS4BO75351 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.95■□□□□ 0.14
VPS4BO75351 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4BO75351 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
VPS4BO75351 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms