Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC15.28■□□□□ 0.04
LDB3O75112 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC15.28■□□□□ 0.04
LDB3O75112 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDB3O75112 LINC00628-201ENST00000628516 1289 ntBASIC15.28■□□□□ 0.04
LDB3O75112 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC15.28■□□□□ 0.04
LDB3O75112 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDB3O75112 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDB3O75112 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
LDB3O75112 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.28■□□□□ 0.04
LDB3O75112 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDB3O75112 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
LDB3O75112 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
LDB3O75112 PCDHA1-201ENST00000378133 2726 ntBASIC15.28■□□□□ 0.04
LDB3O75112 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC15.28■□□□□ 0.04
LDB3O75112 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC15.28■□□□□ 0.04
LDB3O75112 BLK-205ENST00000529894 2017 ntTSL 5 BASIC15.27■□□□□ 0.04
LDB3O75112 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDB3O75112 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC15.27■□□□□ 0.04
LDB3O75112 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LDB3O75112 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.27■□□□□ 0.04
LDB3O75112 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
LDB3O75112 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC15.27■□□□□ 0.04
LDB3O75112 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.27■□□□□ 0.04
LDB3O75112 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDB3O75112 AL391005.1-201ENST00000623953 2435 ntBASIC15.27■□□□□ 0.04
LDB3O75112 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.27■□□□□ 0.04
LDB3O75112 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LDB3O75112 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
LDB3O75112 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDB3O75112 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDB3O75112 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDB3O75112 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC15.27■□□□□ 0.04
LDB3O75112 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDB3O75112 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDB3O75112 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC15.27■□□□□ 0.04
LDB3O75112 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
LDB3O75112 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.27■□□□□ 0.04
LDB3O75112 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDB3O75112 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LDB3O75112 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
LDB3O75112 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.27■□□□□ 0.04
LDB3O75112 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LDB3O75112 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC15.27■□□□□ 0.04
LDB3O75112 SPDYE14P-201ENST00000442619 822 ntBASIC15.27■□□□□ 0.04
LDB3O75112 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDB3O75112 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LDB3O75112 AC109322.1-201ENST00000524499 1264 ntBASIC15.27■□□□□ 0.04
LDB3O75112 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.27■□□□□ 0.04
LDB3O75112 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.27■□□□□ 0.04
LDB3O75112 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.27■□□□□ 0.04
LDB3O75112 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDB3O75112 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDB3O75112 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.27■□□□□ 0.04
LDB3O75112 MIR4321-201ENST00000592276 80 ntBASIC15.27■□□□□ 0.04
LDB3O75112 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC15.27■□□□□ 0.04
LDB3O75112 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC15.27■□□□□ 0.04
LDB3O75112 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.27■□□□□ 0.04
LDB3O75112 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
LDB3O75112 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LDB3O75112 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC15.27■□□□□ 0.03
LDB3O75112 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
LDB3O75112 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
LDB3O75112 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.27■□□□□ 0.03
LDB3O75112 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
LDB3O75112 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC15.27■□□□□ 0.03
LDB3O75112 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC15.27■□□□□ 0.03
LDB3O75112 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.03
LDB3O75112 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LDB3O75112 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LDB3O75112 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
LDB3O75112 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
LDB3O75112 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
LDB3O75112 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
LDB3O75112 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
LDB3O75112 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB3O75112 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LDB3O75112 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB3O75112 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB3O75112 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC15.26■□□□□ 0.03
LDB3O75112 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.26■□□□□ 0.03
LDB3O75112 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB3O75112 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC15.26■□□□□ 0.03
LDB3O75112 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.26■□□□□ 0.03
LDB3O75112 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
LDB3O75112 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB3O75112 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
LDB3O75112 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB3O75112 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
LDB3O75112 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
LDB3O75112 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
LDB3O75112 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.26■□□□□ 0.03
LDB3O75112 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB3O75112 HLA-J-203ENST00000494367 1087 ntBASIC15.26■□□□□ 0.03
LDB3O75112 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC15.26■□□□□ 0.03
LDB3O75112 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.26■□□□□ 0.03
LDB3O75112 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB3O75112 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
LDB3O75112 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB3O75112 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB3O75112 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms