Protein–RNA interactions for Protein: O43707

ACTN4, Alpha-actinin-4, humanhuman

Known RBP Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN4O43707 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ACTN4O43707 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC18.19■□□□□ 0.5
ACTN4O43707 BANP-201ENST00000286122 2368 ntTSL 5 BASIC18.19■□□□□ 0.5
ACTN4O43707 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
ACTN4O43707 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
ACTN4O43707 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ACTN4O43707 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC18.19■□□□□ 0.5
ACTN4O43707 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
ACTN4O43707 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
ACTN4O43707 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
ACTN4O43707 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
ACTN4O43707 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ACTN4O43707 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ACTN4O43707 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
ACTN4O43707 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
ACTN4O43707 AL591424.1-201ENST00000442569 1213 ntBASIC18.19■□□□□ 0.5
ACTN4O43707 KRT18P3-201ENST00000451602 1288 ntBASIC18.19■□□□□ 0.5
ACTN4O43707 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC18.19■□□□□ 0.5
ACTN4O43707 RNA5SP416-201ENST00000516838 111 ntBASIC18.19■□□□□ 0.5
ACTN4O43707 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
ACTN4O43707 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18.19■□□□□ 0.5
ACTN4O43707 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC18.19■□□□□ 0.5
ACTN4O43707 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC18.19■□□□□ 0.5
ACTN4O43707 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
ACTN4O43707 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.19■□□□□ 0.5
ACTN4O43707 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
ACTN4O43707 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC18.19■□□□□ 0.5
ACTN4O43707 AC027601.4-201ENST00000611259 610 ntBASIC18.19■□□□□ 0.5
ACTN4O43707 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC18.19■□□□□ 0.5
ACTN4O43707 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
ACTN4O43707 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ACTN4O43707 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC18.19■□□□□ 0.5
ACTN4O43707 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC18.19■□□□□ 0.5
ACTN4O43707 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC18.19■□□□□ 0.5
ACTN4O43707 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
ACTN4O43707 BSG-215ENST00000618006 1329 ntTSL 2 BASIC18.19■□□□□ 0.5
ACTN4O43707 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
ACTN4O43707 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ACTN4O43707 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ACTN4O43707 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
ACTN4O43707 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC18.18■□□□□ 0.5
ACTN4O43707 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC18.18■□□□□ 0.5
ACTN4O43707 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
ACTN4O43707 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ACTN4O43707 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ACTN4O43707 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
ACTN4O43707 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
ACTN4O43707 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC18.18■□□□□ 0.5
ACTN4O43707 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC18.18■□□□□ 0.5
ACTN4O43707 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ACTN4O43707 AC011477.6-201ENST00000604980 1927 ntBASIC18.18■□□□□ 0.5
ACTN4O43707 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ACTN4O43707 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC18.18■□□□□ 0.5
ACTN4O43707 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
ACTN4O43707 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ACTN4O43707 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ACTN4O43707 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
ACTN4O43707 STK33P1-201ENST00000423835 1218 ntBASIC18.18■□□□□ 0.5
ACTN4O43707 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC18.18■□□□□ 0.5
ACTN4O43707 AC112191.1-201ENST00000523689 701 ntBASIC18.18■□□□□ 0.5
ACTN4O43707 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
ACTN4O43707 RARRES2P8-201ENST00000566335 367 ntBASIC18.18■□□□□ 0.5
ACTN4O43707 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC18.18■□□□□ 0.5
ACTN4O43707 FAM197Y3-203ENST00000618346 717 ntBASIC18.18■□□□□ 0.5
ACTN4O43707 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ACTN4O43707 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ACTN4O43707 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC18.18■□□□□ 0.5
ACTN4O43707 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC18.18■□□□□ 0.5
ACTN4O43707 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC18.18■□□□□ 0.5
ACTN4O43707 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ACTN4O43707 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC18.18■□□□□ 0.5
ACTN4O43707 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC18.18■□□□□ 0.5
ACTN4O43707 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC18.18■□□□□ 0.5
ACTN4O43707 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ACTN4O43707 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ACTN4O43707 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ACTN4O43707 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
ACTN4O43707 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC18.17■□□□□ 0.5
ACTN4O43707 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC18.17■□□□□ 0.5
ACTN4O43707 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
ACTN4O43707 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ACTN4O43707 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ACTN4O43707 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC18.17■□□□□ 0.5
ACTN4O43707 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ACTN4O43707 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ACTN4O43707 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ACTN4O43707 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
ACTN4O43707 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC18.17■□□□□ 0.5
ACTN4O43707 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
ACTN4O43707 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
ACTN4O43707 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ACTN4O43707 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.17■□□□□ 0.5
ACTN4O43707 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
ACTN4O43707 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
ACTN4O43707 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC18.17■□□□□ 0.5
ACTN4O43707 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC18.17■□□□□ 0.5
ACTN4O43707 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ACTN4O43707 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC18.17■□□□□ 0.5
ACTN4O43707 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
ACTN4O43707 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms