Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 AC023157.3-201ENST00000619086 2088 ntBASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 FAM185BP-201ENST00000443595 716 ntBASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 AC073648.2-201ENST00000510116 352 ntBASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 CLEC4GP1-201ENST00000596555 870 ntBASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 LINC01711-201ENST00000598340 967 ntBASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 AC008735.5-201ENST00000623544 497 ntBASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 AC004790.2-201ENST00000623588 572 ntBASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 CICP13-201ENST00000422015 2789 ntBASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
TRIM49D1C9J1S8 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 HAUS4P1-201ENST00000406739 1145 ntBASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 AC108073.2-201ENST00000464002 357 ntBASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 AP002414.3-201ENST00000589352 1468 ntBASIC16.29■□□□□ 0.2
TRIM49D1C9J1S8 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms