Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC30.53■■■□□ 2.48
SHROOM4Q9ULL8 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC30.53■■■□□ 2.48
SHROOM4Q9ULL8 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
SHROOM4Q9ULL8 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
SHROOM4Q9ULL8 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC30.53■■■□□ 2.48
SHROOM4Q9ULL8 AC005229.1-201ENST00000392885 409 ntBASIC30.53■■■□□ 2.48
SHROOM4Q9ULL8 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
SHROOM4Q9ULL8 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
SHROOM4Q9ULL8 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
SHROOM4Q9ULL8 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC30.53■■■□□ 2.48
SHROOM4Q9ULL8 AC024267.1-201ENST00000582320 895 ntBASIC30.53■■■□□ 2.48
SHROOM4Q9ULL8 AC025048.3-201ENST00000590609 569 ntBASIC30.53■■■□□ 2.48
SHROOM4Q9ULL8 AC005702.4-201ENST00000618393 416 ntBASIC30.53■■■□□ 2.48
SHROOM4Q9ULL8 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC30.53■■■□□ 2.48
SHROOM4Q9ULL8 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC30.53■■■□□ 2.48
SHROOM4Q9ULL8 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC30.53■■■□□ 2.48
SHROOM4Q9ULL8 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC30.53■■■□□ 2.48
SHROOM4Q9ULL8 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
SHROOM4Q9ULL8 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
SHROOM4Q9ULL8 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
SHROOM4Q9ULL8 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC30.52■■■□□ 2.48
SHROOM4Q9ULL8 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC30.52■■■□□ 2.48
SHROOM4Q9ULL8 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC30.52■■■□□ 2.48
SHROOM4Q9ULL8 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC30.52■■■□□ 2.48
SHROOM4Q9ULL8 CLK3P2-201ENST00000427566 1453 ntBASIC30.52■■■□□ 2.48
SHROOM4Q9ULL8 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC30.52■■■□□ 2.48
SHROOM4Q9ULL8 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC30.52■■■□□ 2.48
SHROOM4Q9ULL8 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
SHROOM4Q9ULL8 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC30.52■■■□□ 2.48
SHROOM4Q9ULL8 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC30.52■■■□□ 2.48
SHROOM4Q9ULL8 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC30.52■■■□□ 2.48
SHROOM4Q9ULL8 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
SHROOM4Q9ULL8 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC30.52■■■□□ 2.48
SHROOM4Q9ULL8 AC006033.1-201ENST00000440505 426 ntBASIC30.52■■■□□ 2.48
SHROOM4Q9ULL8 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC30.52■■■□□ 2.48
SHROOM4Q9ULL8 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
SHROOM4Q9ULL8 PFN1P12-201ENST00000455938 534 ntBASIC30.52■■■□□ 2.48
SHROOM4Q9ULL8 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC30.52■■■□□ 2.48
SHROOM4Q9ULL8 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC30.52■■■□□ 2.48
SHROOM4Q9ULL8 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC30.52■■■□□ 2.48
SHROOM4Q9ULL8 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC30.52■■■□□ 2.48
SHROOM4Q9ULL8 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
SHROOM4Q9ULL8 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC30.52■■■□□ 2.48
SHROOM4Q9ULL8 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC30.52■■■□□ 2.48
SHROOM4Q9ULL8 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC30.52■■■□□ 2.48
SHROOM4Q9ULL8 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC30.52■■■□□ 2.48
SHROOM4Q9ULL8 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.48
SHROOM4Q9ULL8 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.48
SHROOM4Q9ULL8 CDC14C-201ENST00000428251 1719 ntBASIC30.51■■■□□ 2.48
SHROOM4Q9ULL8 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
SHROOM4Q9ULL8 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
SHROOM4Q9ULL8 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC30.51■■■□□ 2.48
SHROOM4Q9ULL8 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC30.51■■■□□ 2.48
SHROOM4Q9ULL8 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
SHROOM4Q9ULL8 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC30.51■■■□□ 2.48
SHROOM4Q9ULL8 MIR3615-201ENST00000581999 87 ntBASIC30.51■■■□□ 2.48
SHROOM4Q9ULL8 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC30.51■■■□□ 2.48
SHROOM4Q9ULL8 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
SHROOM4Q9ULL8 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC30.51■■■□□ 2.47
SHROOM4Q9ULL8 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC30.51■■■□□ 2.47
SHROOM4Q9ULL8 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
SHROOM4Q9ULL8 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC30.51■■■□□ 2.47
SHROOM4Q9ULL8 ALOX12P2-203ENST00000570921 1945 ntBASIC30.51■■■□□ 2.47
SHROOM4Q9ULL8 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
SHROOM4Q9ULL8 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC30.51■■■□□ 2.47
SHROOM4Q9ULL8 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
SHROOM4Q9ULL8 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
SHROOM4Q9ULL8 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC30.51■■■□□ 2.47
SHROOM4Q9ULL8 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 MIR6069-201ENST00000620069 79 ntBASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 AL022328.1-201ENST00000610050 478 ntBASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC30.5■■■□□ 2.47
SHROOM4Q9ULL8 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
SHROOM4Q9ULL8 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC30.49■■■□□ 2.47
SHROOM4Q9ULL8 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC30.49■■■□□ 2.47
SHROOM4Q9ULL8 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
SHROOM4Q9ULL8 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC30.49■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms