Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 RN7SL510P-201ENST00000581311 263 ntBASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 AC023141.13-201ENST00000604991 943 ntBASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 AQP6-205ENST00000618286 829 ntTSL 5 BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 AC007064.4-201ENST00000637740 555 ntBASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 AL109954.1-202ENST00000564051 2148 ntBASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 TNRC18P2-201ENST00000417666 2714 ntBASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC17.73■□□□□ 0.43
LIMA1Q9UHB6 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 AC105250.1-201ENST00000509378 2057 ntBASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 FAAHP1-202ENST00000446499 1238 ntBASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
LIMA1Q9UHB6 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 AC004870.1-201ENST00000315132 882 ntBASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms