Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 IMPDH1P4-201ENST00000445028 1534 ntBASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 AC093726.1-201ENST00000608064 963 ntBASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 WFDC1-204ENST00000613603 549 ntBASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
LIMD1Q9UGP4 FER1L4-210ENST00000615531 5998 ntBASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 BNIP3P42-201ENST00000454982 569 ntBASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 FTH1-202ENST00000526640 786 ntTSL 2 BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 AC008735.3-201ENST00000596646 500 ntBASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 BNIP3P29-201ENST00000598302 571 ntBASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 AC011447.5-201ENST00000616168 564 ntBASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 AC116353.5-201ENST00000638148 1699 ntBASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMD1Q9UGP4 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.89■□□□□ 0.3
LIMD1Q9UGP4 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.89■□□□□ 0.3
LIMD1Q9UGP4 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.89■□□□□ 0.3
LIMD1Q9UGP4 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms