Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 AL844908.2-201ENST00000609461 460 ntBASIC19.66■□□□□ 0.74
RPAP1Q9BWH6 AL662799.1-202ENST00000614205 422 ntBASIC19.66■□□□□ 0.74
RPAP1Q9BWH6 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
RPAP1Q9BWH6 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC19.66■□□□□ 0.74
RPAP1Q9BWH6 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RPAP1Q9BWH6 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RPAP1Q9BWH6 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC19.66■□□□□ 0.74
RPAP1Q9BWH6 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
RPAP1Q9BWH6 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RPAP1Q9BWH6 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 AC024909.3-201ENST00000611513 2257 ntBASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 AC006449.6-201ENST00000612330 2296 ntBASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 COX5BP8-201ENST00000416911 349 ntBASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 MPI-209ENST00000564003 1195 ntTSL 2 BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RPAP1Q9BWH6 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.74
RPAP1Q9BWH6 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
RPAP1Q9BWH6 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
RPAP1Q9BWH6 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC19.64■□□□□ 0.74
RPAP1Q9BWH6 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
RPAP1Q9BWH6 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RPAP1Q9BWH6 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC19.64■□□□□ 0.73
RPAP1Q9BWH6 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
RPAP1Q9BWH6 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RPAP1Q9BWH6 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RPAP1Q9BWH6 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC19.64■□□□□ 0.73
RPAP1Q9BWH6 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC19.64■□□□□ 0.73
RPAP1Q9BWH6 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC19.64■□□□□ 0.73
RPAP1Q9BWH6 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RPAP1Q9BWH6 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RPAP1Q9BWH6 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC19.64■□□□□ 0.73
RPAP1Q9BWH6 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC19.64■□□□□ 0.73
RPAP1Q9BWH6 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RPAP1Q9BWH6 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RPAP1Q9BWH6 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RPAP1Q9BWH6 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC19.64■□□□□ 0.73
RPAP1Q9BWH6 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC19.64■□□□□ 0.73
RPAP1Q9BWH6 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 AL080243.2-201ENST00000418783 582 ntBASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
RPAP1Q9BWH6 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms