Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC4Q92889 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
ERCC4Q92889 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC4Q92889 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
ERCC4Q92889 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC18.49■□□□□ 0.55
ERCC4Q92889 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC18.49■□□□□ 0.55
ERCC4Q92889 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC4Q92889 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC18.49■□□□□ 0.55
ERCC4Q92889 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC4Q92889 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
ERCC4Q92889 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
ERCC4Q92889 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
ERCC4Q92889 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ERCC4Q92889 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
ERCC4Q92889 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
ERCC4Q92889 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC18.48■□□□□ 0.55
ERCC4Q92889 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ERCC4Q92889 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
ERCC4Q92889 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ERCC4Q92889 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ERCC4Q92889 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
ERCC4Q92889 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ERCC4Q92889 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.48■□□□□ 0.55
ERCC4Q92889 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.48■□□□□ 0.55
ERCC4Q92889 KRT126P-201ENST00000549467 1181 ntBASIC18.48■□□□□ 0.55
ERCC4Q92889 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.48■□□□□ 0.55
ERCC4Q92889 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
ERCC4Q92889 MIR1199-201ENST00000621445 119 ntBASIC18.48■□□□□ 0.55
ERCC4Q92889 AL691432.3-201ENST00000621860 400 ntBASIC18.48■□□□□ 0.55
ERCC4Q92889 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC18.48■□□□□ 0.55
ERCC4Q92889 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ERCC4Q92889 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ERCC4Q92889 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC18.48■□□□□ 0.55
ERCC4Q92889 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ERCC4Q92889 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
ERCC4Q92889 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
ERCC4Q92889 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
ERCC4Q92889 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC18.48■□□□□ 0.55
ERCC4Q92889 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC18.48■□□□□ 0.55
ERCC4Q92889 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC18.48■□□□□ 0.55
ERCC4Q92889 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ERCC4Q92889 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ERCC4Q92889 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC18.48■□□□□ 0.55
ERCC4Q92889 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ERCC4Q92889 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC4Q92889 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC4Q92889 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC4Q92889 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC4Q92889 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC4Q92889 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC4Q92889 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC4Q92889 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC4Q92889 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC4Q92889 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC4Q92889 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC4Q92889 DPM2-202ENST00000373110 738 ntTSL 2 BASIC18.47■□□□□ 0.55
ERCC4Q92889 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC18.47■□□□□ 0.55
ERCC4Q92889 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC18.47■□□□□ 0.55
ERCC4Q92889 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.47■□□□□ 0.55
ERCC4Q92889 HMGA1P7-201ENST00000406908 502 ntBASIC18.47■□□□□ 0.55
ERCC4Q92889 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC4Q92889 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.47■□□□□ 0.55
ERCC4Q92889 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC18.47■□□□□ 0.55
ERCC4Q92889 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.47■□□□□ 0.55
ERCC4Q92889 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
ERCC4Q92889 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC4Q92889 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC4Q92889 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC4Q92889 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
ERCC4Q92889 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC4Q92889 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC4Q92889 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC4Q92889 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC4Q92889 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC18.47■□□□□ 0.55
ERCC4Q92889 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC4Q92889 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC18.47■□□□□ 0.55
ERCC4Q92889 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC4Q92889 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC18.47■□□□□ 0.55
ERCC4Q92889 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
ERCC4Q92889 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC4Q92889 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ERCC4Q92889 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
ERCC4Q92889 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC18.46■□□□□ 0.55
ERCC4Q92889 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ERCC4Q92889 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ERCC4Q92889 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
ERCC4Q92889 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ERCC4Q92889 AL592424.1-201ENST00000563624 1536 ntBASIC18.46■□□□□ 0.55
ERCC4Q92889 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
ERCC4Q92889 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
ERCC4Q92889 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ERCC4Q92889 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
ERCC4Q92889 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
ERCC4Q92889 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
ERCC4Q92889 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC18.46■□□□□ 0.55
ERCC4Q92889 MRPL20P1-201ENST00000400819 433 ntBASIC18.46■□□□□ 0.55
ERCC4Q92889 AC092910.1-201ENST00000482027 1129 ntBASIC18.46■□□□□ 0.55
ERCC4Q92889 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC18.46■□□□□ 0.55
ERCC4Q92889 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ERCC4Q92889 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms