Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC25.06■■□□□ 1.6
VPS8Q8N3P4 AC004233.3-201ENST00000607794 1269 ntBASIC25.06■■□□□ 1.6
VPS8Q8N3P4 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC25.06■■□□□ 1.6
VPS8Q8N3P4 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
VPS8Q8N3P4 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC25.06■■□□□ 1.6
VPS8Q8N3P4 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC25.06■■□□□ 1.6
VPS8Q8N3P4 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC25.06■■□□□ 1.6
VPS8Q8N3P4 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
VPS8Q8N3P4 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
VPS8Q8N3P4 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC25.05■■□□□ 1.6
VPS8Q8N3P4 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC25.05■■□□□ 1.6
VPS8Q8N3P4 COPE-202ENST00000349893 948 ntTSL 2 BASIC25.05■■□□□ 1.6
VPS8Q8N3P4 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
VPS8Q8N3P4 RAC2-202ENST00000401529 569 ntTSL 4 BASIC25.05■■□□□ 1.6
VPS8Q8N3P4 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC25.05■■□□□ 1.6
VPS8Q8N3P4 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
VPS8Q8N3P4 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC25.05■■□□□ 1.6
VPS8Q8N3P4 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC25.05■■□□□ 1.6
VPS8Q8N3P4 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC25.05■■□□□ 1.6
VPS8Q8N3P4 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC25.05■■□□□ 1.6
VPS8Q8N3P4 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
VPS8Q8N3P4 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC25.05■■□□□ 1.6
VPS8Q8N3P4 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC25.05■■□□□ 1.6
VPS8Q8N3P4 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
VPS8Q8N3P4 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
VPS8Q8N3P4 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC25.05■■□□□ 1.6
VPS8Q8N3P4 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC25.05■■□□□ 1.6
VPS8Q8N3P4 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
VPS8Q8N3P4 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
VPS8Q8N3P4 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
VPS8Q8N3P4 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 AL391005.1-201ENST00000623953 2435 ntBASIC25.04■■□□□ 1.6
VPS8Q8N3P4 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
VPS8Q8N3P4 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
VPS8Q8N3P4 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC25.03■■□□□ 1.6
VPS8Q8N3P4 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC25.03■■□□□ 1.6
VPS8Q8N3P4 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC25.03■■□□□ 1.6
VPS8Q8N3P4 CDK4-206ENST00000549606 558 ntTSL 2 BASIC25.03■■□□□ 1.6
VPS8Q8N3P4 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC25.03■■□□□ 1.6
VPS8Q8N3P4 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC25.03■■□□□ 1.6
VPS8Q8N3P4 AL662799.1-202ENST00000614205 422 ntBASIC25.03■■□□□ 1.6
VPS8Q8N3P4 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
VPS8Q8N3P4 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
VPS8Q8N3P4 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC25.03■■□□□ 1.6
VPS8Q8N3P4 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC25.03■■□□□ 1.6
VPS8Q8N3P4 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC25.03■■□□□ 1.6
VPS8Q8N3P4 AC026691.1-201ENST00000602502 2017 ntBASIC25.03■■□□□ 1.6
VPS8Q8N3P4 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
VPS8Q8N3P4 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC25.03■■□□□ 1.6
VPS8Q8N3P4 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
VPS8Q8N3P4 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
VPS8Q8N3P4 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
VPS8Q8N3P4 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC25.03■■□□□ 1.6
VPS8Q8N3P4 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC25.03■■□□□ 1.6
VPS8Q8N3P4 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
VPS8Q8N3P4 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC25.03■■□□□ 1.6
VPS8Q8N3P4 TPRX2P-201ENST00000535362 881 ntBASIC25.03■■□□□ 1.6
VPS8Q8N3P4 COX11-202ENST00000571584 1108 ntTSL 2 BASIC25.03■■□□□ 1.6
VPS8Q8N3P4 AC025048.6-201ENST00000634326 1161 ntBASIC25.03■■□□□ 1.6
VPS8Q8N3P4 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC25.02■■□□□ 1.6
VPS8Q8N3P4 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
VPS8Q8N3P4 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
VPS8Q8N3P4 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC25.02■■□□□ 1.6
VPS8Q8N3P4 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC25.02■■□□□ 1.6
VPS8Q8N3P4 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC25.02■■□□□ 1.6
VPS8Q8N3P4 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC25.02■■□□□ 1.6
VPS8Q8N3P4 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
VPS8Q8N3P4 AL513523.2-202ENST00000427283 2040 ntBASIC25.02■■□□□ 1.6
VPS8Q8N3P4 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC25.02■■□□□ 1.6
VPS8Q8N3P4 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC25.02■■□□□ 1.6
VPS8Q8N3P4 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
VPS8Q8N3P4 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms