Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 AC073592.8-201ENST00000624126 511 ntBASIC15.12■□□□□ 0.01
BEST3Q8N1M1 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 GPAA1P2-202ENST00000606848 1787 ntBASIC15.11■□□□□ 0.01
BEST3Q8N1M1 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 UGT1A2P-201ENST00000454886 866 ntBASIC15.11■□□□□ 0.01
BEST3Q8N1M1 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 AC027369.6-201ENST00000525520 931 ntBASIC15.11■□□□□ 0.01
BEST3Q8N1M1 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 SPDYE12P-201ENST00000618416 771 ntBASIC15.11■□□□□ 0.01
BEST3Q8N1M1 AMT-206ENST00000458307 1860 ntTSL 2 BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC15.11■□□□□ 0.01
BEST3Q8N1M1 AC008741.2-201ENST00000612792 3115 ntBASIC15.1■□□□□ 0.01
BEST3Q8N1M1 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 AC106886.4-201ENST00000623557 2502 ntBASIC15.1■□□□□ 0.01
BEST3Q8N1M1 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 GRAMD4P3-201ENST00000621665 1669 ntBASIC15.1■□□□□ 0.01
BEST3Q8N1M1 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 AL035633.1-201ENST00000406139 838 ntBASIC15.1■□□□□ 0.01
BEST3Q8N1M1 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 TSPY16P-201ENST00000449843 468 ntBASIC15.1■□□□□ 0.01
BEST3Q8N1M1 AC138761.1-201ENST00000584393 385 ntBASIC15.1■□□□□ 0.01
BEST3Q8N1M1 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC15.1■□□□□ 0.01
BEST3Q8N1M1 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 AC006538.1-201ENST00000567905 1585 ntBASIC15.1■□□□□ 0.01
BEST3Q8N1M1 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
BEST3Q8N1M1 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
BEST3Q8N1M1 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 1555.8 ms