Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 AC006001.1-201ENST00000325130 474 ntBASIC21.72■■□□□ 1.07
NPHP3Q7Z494 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 AC000095.1-201ENST00000603208 874 ntBASIC21.72■■□□□ 1.07
NPHP3Q7Z494 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 AC138028.6-201ENST00000616106 1482 ntBASIC21.72■■□□□ 1.07
NPHP3Q7Z494 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 REXO1L8P-201ENST00000604378 1897 ntBASIC21.72■■□□□ 1.07
NPHP3Q7Z494 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP3Q7Z494 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP3Q7Z494 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP3Q7Z494 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP3Q7Z494 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP3Q7Z494 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC21.71■■□□□ 1.07
NPHP3Q7Z494 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
NPHP3Q7Z494 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP3Q7Z494 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC21.71■■□□□ 1.07
NPHP3Q7Z494 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP3Q7Z494 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
NPHP3Q7Z494 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP3Q7Z494 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP3Q7Z494 BTBD6P1-201ENST00000412176 1267 ntBASIC21.71■■□□□ 1.07
NPHP3Q7Z494 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC21.71■■□□□ 1.07
NPHP3Q7Z494 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC21.71■■□□□ 1.07
NPHP3Q7Z494 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC21.71■■□□□ 1.07
NPHP3Q7Z494 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC21.71■■□□□ 1.07
NPHP3Q7Z494 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC21.71■■□□□ 1.07
NPHP3Q7Z494 AC004898.1-201ENST00000451057 766 ntBASIC21.71■■□□□ 1.07
NPHP3Q7Z494 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
NPHP3Q7Z494 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP3Q7Z494 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC21.71■■□□□ 1.07
NPHP3Q7Z494 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC21.71■■□□□ 1.07
NPHP3Q7Z494 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP3Q7Z494 AL603756.1-201ENST00000606511 2163 ntBASIC21.71■■□□□ 1.07
NPHP3Q7Z494 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP3Q7Z494 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.07
NPHP3Q7Z494 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
NPHP3Q7Z494 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
NPHP3Q7Z494 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.07
NPHP3Q7Z494 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
NPHP3Q7Z494 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP3Q7Z494 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
NPHP3Q7Z494 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP3Q7Z494 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC21.7■■□□□ 1.06
NPHP3Q7Z494 GGT3P-204ENST00000453783 1664 ntBASIC21.7■■□□□ 1.06
NPHP3Q7Z494 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC21.7■■□□□ 1.06
NPHP3Q7Z494 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC21.7■■□□□ 1.06
NPHP3Q7Z494 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC21.7■■□□□ 1.06
NPHP3Q7Z494 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP3Q7Z494 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP3Q7Z494 AC018470.1-201ENST00000624790 3129 ntBASIC21.7■■□□□ 1.06
NPHP3Q7Z494 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP3Q7Z494 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP3Q7Z494 TEX30-203ENST00000376022 828 ntTSL 2 BASIC21.7■■□□□ 1.06
NPHP3Q7Z494 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC21.7■■□□□ 1.06
NPHP3Q7Z494 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC21.7■■□□□ 1.06
NPHP3Q7Z494 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP3Q7Z494 AC105129.2-201ENST00000559536 390 ntBASIC21.7■■□□□ 1.06
NPHP3Q7Z494 AC016629.1-201ENST00000596579 586 ntBASIC21.7■■□□□ 1.06
NPHP3Q7Z494 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
NPHP3Q7Z494 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP3Q7Z494 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP3Q7Z494 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
NPHP3Q7Z494 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
NPHP3Q7Z494 HARS-202ENST00000415192 1401 ntTSL 2 BASIC21.7■■□□□ 1.06
NPHP3Q7Z494 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP3Q7Z494 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC21.7■■□□□ 1.06
NPHP3Q7Z494 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC21.69■■□□□ 1.06
NPHP3Q7Z494 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NPHP3Q7Z494 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC21.69■■□□□ 1.06
NPHP3Q7Z494 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
NPHP3Q7Z494 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC21.69■■□□□ 1.06
NPHP3Q7Z494 AC020763.4-201ENST00000623414 4170 ntBASIC21.69■■□□□ 1.06
NPHP3Q7Z494 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC21.69■■□□□ 1.06
NPHP3Q7Z494 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NPHP3Q7Z494 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NPHP3Q7Z494 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC21.69■■□□□ 1.06
NPHP3Q7Z494 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC21.69■■□□□ 1.06
NPHP3Q7Z494 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms