Protein–RNA interactions for Protein: P61009

SPCS3, Signal peptidase complex subunit 3, humanhuman

Predictions only

Length 180 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPCS3P61009 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPCS3P61009 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
SPCS3P61009 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
SPCS3P61009 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC13.32□□□□□ -0.28
SPCS3P61009 REXO1L8P-201ENST00000604378 1897 ntBASIC13.32□□□□□ -0.28
SPCS3P61009 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
SPCS3P61009 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC13.32□□□□□ -0.28
SPCS3P61009 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPCS3P61009 AL353732.1-201ENST00000569618 1459 ntBASIC13.32□□□□□ -0.28
SPCS3P61009 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
SPCS3P61009 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPCS3P61009 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC13.32□□□□□ -0.28
SPCS3P61009 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPCS3P61009 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC13.32□□□□□ -0.28
SPCS3P61009 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC13.32□□□□□ -0.28
SPCS3P61009 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SPCS3P61009 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPCS3P61009 ISCU-203ENST00000431221 799 ntTSL 2 BASIC13.32□□□□□ -0.28
SPCS3P61009 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC13.32□□□□□ -0.28
SPCS3P61009 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC13.32□□□□□ -0.28
SPCS3P61009 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SPCS3P61009 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
SPCS3P61009 AC087388.1-201ENST00000571370 1112 ntBASIC13.32□□□□□ -0.28
SPCS3P61009 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC13.32□□□□□ -0.28
SPCS3P61009 AC020765.3-201ENST00000613051 740 ntBASIC13.32□□□□□ -0.28
SPCS3P61009 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
SPCS3P61009 AP000550.4-202ENST00000639755 178 ntBASIC13.32□□□□□ -0.28
SPCS3P61009 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC13.32□□□□□ -0.28
SPCS3P61009 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC13.32□□□□□ -0.28
SPCS3P61009 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPCS3P61009 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
SPCS3P61009 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC13.32□□□□□ -0.28
SPCS3P61009 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPCS3P61009 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC13.32□□□□□ -0.28
SPCS3P61009 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPCS3P61009 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPCS3P61009 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC13.32□□□□□ -0.28
SPCS3P61009 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPCS3P61009 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPCS3P61009 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPCS3P61009 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPCS3P61009 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPCS3P61009 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPCS3P61009 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC13.32□□□□□ -0.28
SPCS3P61009 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPCS3P61009 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPCS3P61009 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SPCS3P61009 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPCS3P61009 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13.31□□□□□ -0.28
SPCS3P61009 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC13.31□□□□□ -0.28
SPCS3P61009 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPCS3P61009 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
SPCS3P61009 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC13.31□□□□□ -0.28
SPCS3P61009 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
SPCS3P61009 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC13.31□□□□□ -0.28
SPCS3P61009 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC13.31□□□□□ -0.28
SPCS3P61009 AP005117.1-202ENST00000581724 1908 ntBASIC13.31□□□□□ -0.28
SPCS3P61009 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
SPCS3P61009 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPCS3P61009 PI4KAP1-204ENST00000612579 1703 ntBASIC13.31□□□□□ -0.28
SPCS3P61009 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC13.31□□□□□ -0.28
SPCS3P61009 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC13.31□□□□□ -0.28
SPCS3P61009 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SPCS3P61009 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPCS3P61009 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPCS3P61009 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPCS3P61009 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPCS3P61009 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC13.31□□□□□ -0.28
SPCS3P61009 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC13.31□□□□□ -0.28
SPCS3P61009 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC13.31□□□□□ -0.28
SPCS3P61009 MSRA-206ENST00000521209 814 ntTSL 3 BASIC13.31□□□□□ -0.28
SPCS3P61009 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
SPCS3P61009 PNN-202ENST00000553331 656 ntTSL 3 BASIC13.31□□□□□ -0.28
SPCS3P61009 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC13.31□□□□□ -0.28
SPCS3P61009 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC13.31□□□□□ -0.28
SPCS3P61009 AC069148.1-201ENST00000608741 768 ntBASIC13.31□□□□□ -0.28
SPCS3P61009 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPCS3P61009 NPAP1P7-201ENST00000613027 823 ntBASIC13.31□□□□□ -0.28
SPCS3P61009 AC010654.1-201ENST00000615722 808 ntBASIC13.31□□□□□ -0.28
SPCS3P61009 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC13.31□□□□□ -0.28
SPCS3P61009 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPCS3P61009 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPCS3P61009 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPCS3P61009 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC13.31□□□□□ -0.28
SPCS3P61009 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC13.31□□□□□ -0.28
SPCS3P61009 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
SPCS3P61009 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPCS3P61009 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPCS3P61009 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
SPCS3P61009 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
SPCS3P61009 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPCS3P61009 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC13.31□□□□□ -0.28
SPCS3P61009 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPCS3P61009 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPCS3P61009 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPCS3P61009 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
SPCS3P61009 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SPCS3P61009 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
SPCS3P61009 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SPCS3P61009 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms