Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.45
FOXA3P55318 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 MIR718-201ENST00000390190 70 ntBASIC12.27□□□□□ -0.45
FOXA3P55318 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC12.27□□□□□ -0.45
FOXA3P55318 AL359075.1-203ENST00000462729 1002 ntBASIC12.27□□□□□ -0.45
FOXA3P55318 DENND3-207ENST00000518347 850 ntTSL 2 BASIC12.27□□□□□ -0.45
FOXA3P55318 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC12.27□□□□□ -0.45
FOXA3P55318 MIR4492-201ENST00000581627 80 ntBASIC12.27□□□□□ -0.45
FOXA3P55318 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC12.27□□□□□ -0.45
FOXA3P55318 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 GPAA1P2-202ENST00000606848 1787 ntBASIC12.27□□□□□ -0.45
FOXA3P55318 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
FOXA3P55318 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 LINC01568-207ENST00000641790 1380 ntBASIC12.27□□□□□ -0.45
FOXA3P55318 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 BANP-203ENST00000393207 2438 ntTSL 2 BASIC12.27□□□□□ -0.45
FOXA3P55318 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC12.27□□□□□ -0.45
FOXA3P55318 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC12.26□□□□□ -0.45
FOXA3P55318 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 UCKL1-AS1-201ENST00000623569 3602 ntBASIC12.26□□□□□ -0.45
FOXA3P55318 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC12.26□□□□□ -0.45
FOXA3P55318 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC12.26□□□□□ -0.45
FOXA3P55318 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC12.26□□□□□ -0.45
FOXA3P55318 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
FOXA3P55318 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
FOXA3P55318 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC12.26□□□□□ -0.45
FOXA3P55318 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC12.26□□□□□ -0.45
FOXA3P55318 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
FOXA3P55318 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC12.26□□□□□ -0.45
FOXA3P55318 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
FOXA3P55318 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC12.26□□□□□ -0.45
FOXA3P55318 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC12.26□□□□□ -0.45
FOXA3P55318 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC12.26□□□□□ -0.45
FOXA3P55318 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC12.26□□□□□ -0.45
FOXA3P55318 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC12.26□□□□□ -0.45
FOXA3P55318 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC12.26□□□□□ -0.45
FOXA3P55318 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC12.26□□□□□ -0.45
FOXA3P55318 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC12.26□□□□□ -0.45
FOXA3P55318 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 UBC-206ENST00000538617 1303 ntTSL 5 BASIC12.26□□□□□ -0.45
FOXA3P55318 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
FOXA3P55318 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC12.26□□□□□ -0.45
FOXA3P55318 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 PC-214ENST00000628663 1470 ntTSL 5 BASIC12.26□□□□□ -0.45
FOXA3P55318 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC12.26□□□□□ -0.45
FOXA3P55318 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC12.26□□□□□ -0.45
FOXA3P55318 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC12.26□□□□□ -0.45
FOXA3P55318 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC12.26□□□□□ -0.45
FOXA3P55318 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
FOXA3P55318 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC12.26□□□□□ -0.45
FOXA3P55318 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA3P55318 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA3P55318 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms