Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 ME2P1-201ENST00000426028 1970 ntBASIC17.42■□□□□ 0.38
VCPP55072 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
VCPP55072 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VCPP55072 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.42■□□□□ 0.38
VCPP55072 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
VCPP55072 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VCPP55072 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
VCPP55072 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VCPP55072 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
VCPP55072 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.42■□□□□ 0.38
VCPP55072 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
VCPP55072 AC012569.1-201ENST00000591191 1524 ntBASIC17.42■□□□□ 0.38
VCPP55072 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VCPP55072 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
VCPP55072 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCPP55072 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCPP55072 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCPP55072 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCPP55072 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCPP55072 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
VCPP55072 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCPP55072 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCPP55072 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCPP55072 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCPP55072 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCPP55072 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.41■□□□□ 0.38
VCPP55072 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCPP55072 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCPP55072 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCPP55072 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC17.41■□□□□ 0.38
VCPP55072 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC17.41■□□□□ 0.38
VCPP55072 MIR1909-201ENST00000411312 80 ntBASIC17.41■□□□□ 0.38
VCPP55072 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
VCPP55072 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC17.41■□□□□ 0.38
VCPP55072 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VCPP55072 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC17.41■□□□□ 0.38
VCPP55072 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.41■□□□□ 0.38
VCPP55072 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.41■□□□□ 0.38
VCPP55072 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC17.41■□□□□ 0.38
VCPP55072 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.41■□□□□ 0.38
VCPP55072 LINC01225-203ENST00000563550 1244 ntBASIC17.41■□□□□ 0.38
VCPP55072 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC17.41■□□□□ 0.38
VCPP55072 AC017083.2-201ENST00000608069 979 ntBASIC17.41■□□□□ 0.38
VCPP55072 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC17.41■□□□□ 0.38
VCPP55072 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCPP55072 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VCPP55072 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCPP55072 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCPP55072 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCPP55072 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCPP55072 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCPP55072 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCPP55072 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
VCPP55072 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCPP55072 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.41■□□□□ 0.38
VCPP55072 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCPP55072 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VCPP55072 TOP3BP1-201ENST00000420768 1380 ntBASIC17.4■□□□□ 0.38
VCPP55072 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.4■□□□□ 0.38
VCPP55072 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VCPP55072 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
VCPP55072 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VCPP55072 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
VCPP55072 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.4■□□□□ 0.38
VCPP55072 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
VCPP55072 AL353732.1-201ENST00000569618 1459 ntBASIC17.4■□□□□ 0.38
VCPP55072 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.4■□□□□ 0.38
VCPP55072 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VCPP55072 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC17.4■□□□□ 0.38
VCPP55072 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.4■□□□□ 0.38
VCPP55072 GATD1-206ENST00000526325 756 ntTSL 5 BASIC17.4■□□□□ 0.38
VCPP55072 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
VCPP55072 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.4■□□□□ 0.38
VCPP55072 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC17.4■□□□□ 0.38
VCPP55072 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC17.4■□□□□ 0.38
VCPP55072 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VCPP55072 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VCPP55072 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VCPP55072 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VCPP55072 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.4■□□□□ 0.38
VCPP55072 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
VCPP55072 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
VCPP55072 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
VCPP55072 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
VCPP55072 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC17.4■□□□□ 0.38
VCPP55072 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.4■□□□□ 0.38
VCPP55072 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
VCPP55072 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VCPP55072 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VCPP55072 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VCPP55072 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.4■□□□□ 0.38
VCPP55072 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
VCPP55072 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
VCPP55072 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
VCPP55072 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
VCPP55072 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
VCPP55072 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VCPP55072 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
VCPP55072 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
VCPP55072 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms