Protein–RNA interactions for Protein: P53671

LIMK2, LIM domain kinase 2, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK2P53671 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMK2P53671 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
LIMK2P53671 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC16.41■□□□□ 0.22
LIMK2P53671 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMK2P53671 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LIMK2P53671 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMK2P53671 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMK2P53671 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
LIMK2P53671 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMK2P53671 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMK2P53671 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIMK2P53671 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIMK2P53671 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
LIMK2P53671 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMK2P53671 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.4■□□□□ 0.22
LIMK2P53671 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMK2P53671 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMK2P53671 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMK2P53671 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.4■□□□□ 0.22
LIMK2P53671 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMK2P53671 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.4■□□□□ 0.22
LIMK2P53671 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMK2P53671 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
LIMK2P53671 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.4■□□□□ 0.22
LIMK2P53671 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.4■□□□□ 0.22
LIMK2P53671 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.4■□□□□ 0.22
LIMK2P53671 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16.4■□□□□ 0.22
LIMK2P53671 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.4■□□□□ 0.22
LIMK2P53671 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.4■□□□□ 0.22
LIMK2P53671 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.4■□□□□ 0.22
LIMK2P53671 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.4■□□□□ 0.22
LIMK2P53671 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIMK2P53671 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.4■□□□□ 0.22
LIMK2P53671 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.4■□□□□ 0.22
LIMK2P53671 AC004835.2-201ENST00000603762 682 ntBASIC16.4■□□□□ 0.22
LIMK2P53671 AL513210.1-201ENST00000629608 234 ntBASIC16.4■□□□□ 0.22
LIMK2P53671 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.4■□□□□ 0.22
LIMK2P53671 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIMK2P53671 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.4■□□□□ 0.22
LIMK2P53671 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIMK2P53671 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.4■□□□□ 0.22
LIMK2P53671 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMK2P53671 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIMK2P53671 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.4■□□□□ 0.22
LIMK2P53671 AC092919.2-201ENST00000623631 1645 ntBASIC16.4■□□□□ 0.22
LIMK2P53671 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMK2P53671 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIMK2P53671 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.4■□□□□ 0.22
LIMK2P53671 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMK2P53671 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.4■□□□□ 0.22
LIMK2P53671 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
LIMK2P53671 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.4■□□□□ 0.22
LIMK2P53671 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMK2P53671 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
LIMK2P53671 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.4■□□□□ 0.22
LIMK2P53671 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
LIMK2P53671 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMK2P53671 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.39■□□□□ 0.22
LIMK2P53671 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.22
LIMK2P53671 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LIMK2P53671 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIMK2P53671 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
LIMK2P53671 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LIMK2P53671 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIMK2P53671 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
LIMK2P53671 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.39■□□□□ 0.21
LIMK2P53671 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.39■□□□□ 0.21
LIMK2P53671 HMGA1P7-201ENST00000406908 502 ntBASIC16.39■□□□□ 0.21
LIMK2P53671 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LIMK2P53671 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.39■□□□□ 0.21
LIMK2P53671 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
LIMK2P53671 RPL28-209ENST00000560055 670 ntTSL 3 BASIC16.39■□□□□ 0.21
LIMK2P53671 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.39■□□□□ 0.21
LIMK2P53671 AL031055.1-201ENST00000606362 631 ntBASIC16.39■□□□□ 0.21
LIMK2P53671 AC105339.1-204ENST00000636249 355 ntBASIC16.39■□□□□ 0.21
LIMK2P53671 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LIMK2P53671 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.39■□□□□ 0.21
LIMK2P53671 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIMK2P53671 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
LIMK2P53671 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIMK2P53671 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
LIMK2P53671 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIMK2P53671 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
LIMK2P53671 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIMK2P53671 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
LIMK2P53671 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIMK2P53671 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.39■□□□□ 0.21
LIMK2P53671 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIMK2P53671 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
LIMK2P53671 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
LIMK2P53671 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIMK2P53671 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
LIMK2P53671 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIMK2P53671 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIMK2P53671 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.38■□□□□ 0.21
LIMK2P53671 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC16.38■□□□□ 0.21
LIMK2P53671 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIMK2P53671 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.38■□□□□ 0.21
LIMK2P53671 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LIMK2P53671 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms