Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC22.17■■□□□ 1.14
MSH6P52701 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
MSH6P52701 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH6P52701 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC22.17■■□□□ 1.14
MSH6P52701 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH6P52701 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH6P52701 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH6P52701 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH6P52701 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH6P52701 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
MSH6P52701 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
MSH6P52701 AL391256.1-201ENST00000443260 1855 ntBASIC22.16■■□□□ 1.14
MSH6P52701 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
MSH6P52701 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC22.16■■□□□ 1.14
MSH6P52701 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
MSH6P52701 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
MSH6P52701 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
MSH6P52701 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
MSH6P52701 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
MSH6P52701 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC22.16■■□□□ 1.14
MSH6P52701 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
MSH6P52701 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
MSH6P52701 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC22.16■■□□□ 1.14
MSH6P52701 ACR-203ENST00000529621 708 ntTSL 5 BASIC22.16■■□□□ 1.14
MSH6P52701 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC22.16■■□□□ 1.14
MSH6P52701 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC22.16■■□□□ 1.14
MSH6P52701 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC22.16■■□□□ 1.14
MSH6P52701 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC22.16■■□□□ 1.14
MSH6P52701 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
MSH6P52701 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
MSH6P52701 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
MSH6P52701 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
MSH6P52701 RHBDF1P1-201ENST00000427504 1941 ntBASIC22.16■■□□□ 1.14
MSH6P52701 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
MSH6P52701 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
MSH6P52701 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
MSH6P52701 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
MSH6P52701 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC22.16■■□□□ 1.14
MSH6P52701 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC22.16■■□□□ 1.14
MSH6P52701 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC22.15■■□□□ 1.14
MSH6P52701 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC22.15■■□□□ 1.14
MSH6P52701 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC22.15■■□□□ 1.14
MSH6P52701 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC22.15■■□□□ 1.14
MSH6P52701 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH6P52701 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
MSH6P52701 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH6P52701 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
MSH6P52701 AC004987.2-201ENST00000395959 1148 ntBASIC22.15■■□□□ 1.14
MSH6P52701 KRTAP10-13P-201ENST00000412914 571 ntBASIC22.15■■□□□ 1.14
MSH6P52701 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC22.15■■□□□ 1.14
MSH6P52701 FAM197Y7-201ENST00000432892 766 ntBASIC22.15■■□□□ 1.14
MSH6P52701 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC22.15■■□□□ 1.14
MSH6P52701 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC22.15■■□□□ 1.14
MSH6P52701 RPSAP36-202ENST00000494591 1261 ntBASIC22.15■■□□□ 1.14
MSH6P52701 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
MSH6P52701 AC078819.1-201ENST00000547454 765 ntBASIC22.15■■□□□ 1.14
MSH6P52701 AC012085.1-201ENST00000548270 765 ntBASIC22.15■■□□□ 1.14
MSH6P52701 AC104982.3-201ENST00000581995 514 ntBASIC22.15■■□□□ 1.14
MSH6P52701 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC22.15■■□□□ 1.14
MSH6P52701 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC22.15■■□□□ 1.14
MSH6P52701 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH6P52701 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC22.15■■□□□ 1.14
MSH6P52701 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC22.15■■□□□ 1.14
MSH6P52701 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC22.15■■□□□ 1.14
MSH6P52701 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH6P52701 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH6P52701 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
MSH6P52701 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH6P52701 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.14
MSH6P52701 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC22.14■■□□□ 1.14
MSH6P52701 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
MSH6P52701 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC22.14■■□□□ 1.14
MSH6P52701 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.14
MSH6P52701 GUK1-206ENST00000366723 845 ntTSL 5 BASIC22.14■■□□□ 1.14
MSH6P52701 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC22.14■■□□□ 1.14
MSH6P52701 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC22.14■■□□□ 1.14
MSH6P52701 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC22.14■■□□□ 1.14
MSH6P52701 APOA2-204ENST00000464492 530 ntTSL 3 BASIC22.14■■□□□ 1.14
MSH6P52701 MIR5572-201ENST00000583188 137 ntBASIC22.14■■□□□ 1.14
MSH6P52701 NAT9-222ENST00000583476 583 ntTSL 3 BASIC22.14■■□□□ 1.14
MSH6P52701 EEF1DP1-201ENST00000585891 896 ntBASIC22.14■■□□□ 1.14
MSH6P52701 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC22.14■■□□□ 1.14
MSH6P52701 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC22.14■■□□□ 1.14
MSH6P52701 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC22.14■■□□□ 1.14
MSH6P52701 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
MSH6P52701 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
MSH6P52701 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
MSH6P52701 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC22.14■■□□□ 1.13
MSH6P52701 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC22.14■■□□□ 1.13
MSH6P52701 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
MSH6P52701 CROCCP2-202ENST00000412962 2773 ntBASIC22.14■■□□□ 1.13
MSH6P52701 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
MSH6P52701 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC22.14■■□□□ 1.13
MSH6P52701 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
MSH6P52701 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
MSH6P52701 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC22.14■■□□□ 1.13
MSH6P52701 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC22.14■■□□□ 1.13
MSH6P52701 MIR33B-201ENST00000385104 96 ntBASIC22.13■■□□□ 1.13
MSH6P52701 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC22.13■■□□□ 1.13
MSH6P52701 KRT18P64-201ENST00000434946 1219 ntBASIC22.13■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms