Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC14.34□□□□□ -0.11
CX3CR1P49238 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CR1P49238 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CR1P49238 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
CX3CR1P49238 U82695.1-201ENST00000635752 1889 ntBASIC14.34□□□□□ -0.11
CX3CR1P49238 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CR1P49238 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CR1P49238 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CR1P49238 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC14.34□□□□□ -0.11
CX3CR1P49238 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
CX3CR1P49238 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC14.34□□□□□ -0.11
CX3CR1P49238 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC14.34□□□□□ -0.11
CX3CR1P49238 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC14.34□□□□□ -0.11
CX3CR1P49238 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC14.34□□□□□ -0.11
CX3CR1P49238 FIS1-203ENST00000442303 631 ntTSL 3 BASIC14.34□□□□□ -0.11
CX3CR1P49238 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC14.34□□□□□ -0.11
CX3CR1P49238 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC14.34□□□□□ -0.11
CX3CR1P49238 AC079776.4-201ENST00000511039 504 ntBASIC14.34□□□□□ -0.11
CX3CR1P49238 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CR1P49238 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC14.34□□□□□ -0.11
CX3CR1P49238 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CR1P49238 CD63-204ENST00000546939 779 ntTSL 3 BASIC14.34□□□□□ -0.11
CX3CR1P49238 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CR1P49238 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CR1P49238 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC14.34□□□□□ -0.11
CX3CR1P49238 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CR1P49238 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
CX3CR1P49238 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CR1P49238 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CR1P49238 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CX3CR1P49238 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CR1P49238 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC14.34□□□□□ -0.11
CX3CR1P49238 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CR1P49238 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
CX3CR1P49238 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CR1P49238 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC14.34□□□□□ -0.11
CX3CR1P49238 HLA-A-201ENST00000376802 1334 ntBASIC14.34□□□□□ -0.11
CX3CR1P49238 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.34□□□□□ -0.11
CX3CR1P49238 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC14.34□□□□□ -0.11
CX3CR1P49238 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CR1P49238 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CR1P49238 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
CX3CR1P49238 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CR1P49238 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CR1P49238 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CR1P49238 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CR1P49238 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CX3CR1P49238 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
CX3CR1P49238 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CX3CR1P49238 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
CX3CR1P49238 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CX3CR1P49238 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CR1P49238 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CR1P49238 ING5-213ENST00000636051 4199 ntTSL 5 BASIC14.33□□□□□ -0.12
CX3CR1P49238 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC14.33□□□□□ -0.12
CX3CR1P49238 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC14.33□□□□□ -0.12
CX3CR1P49238 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CR1P49238 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CR1P49238 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CR1P49238 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC14.33□□□□□ -0.12
CX3CR1P49238 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CR1P49238 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CR1P49238 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC14.33□□□□□ -0.12
CX3CR1P49238 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CR1P49238 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CR1P49238 VMO1-203ENST00000416307 712 ntTSL 2 BASIC14.33□□□□□ -0.12
CX3CR1P49238 RHOQP3-201ENST00000437982 621 ntBASIC14.33□□□□□ -0.12
CX3CR1P49238 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC14.33□□□□□ -0.12
CX3CR1P49238 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CR1P49238 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC14.33□□□□□ -0.12
CX3CR1P49238 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CX3CR1P49238 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CR1P49238 AC092850.2-201ENST00000623821 2697 ntBASIC14.33□□□□□ -0.12
CX3CR1P49238 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC14.33□□□□□ -0.12
CX3CR1P49238 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
CX3CR1P49238 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
CX3CR1P49238 SUPT20HL2-201ENST00000486479 2409 ntBASIC14.33□□□□□ -0.12
CX3CR1P49238 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CR1P49238 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CR1P49238 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CR1P49238 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CR1P49238 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CR1P49238 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CX3CR1P49238 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC14.32□□□□□ -0.12
CX3CR1P49238 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CX3CR1P49238 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CX3CR1P49238 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CX3CR1P49238 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
CX3CR1P49238 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CX3CR1P49238 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.32□□□□□ -0.12
CX3CR1P49238 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CX3CR1P49238 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
CX3CR1P49238 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CX3CR1P49238 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CX3CR1P49238 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CX3CR1P49238 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CX3CR1P49238 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CX3CR1P49238 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
CX3CR1P49238 MIR648-201ENST00000385046 94 ntBASIC14.32□□□□□ -0.12
CX3CR1P49238 FALEC-201ENST00000416894 566 ntTSL 3 BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms