Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC20.97■□□□□ 0.95
COL18A1P39060 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL18A1P39060 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL18A1P39060 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC20.97■□□□□ 0.95
COL18A1P39060 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC20.97■□□□□ 0.95
COL18A1P39060 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL18A1P39060 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC20.96■□□□□ 0.95
COL18A1P39060 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL18A1P39060 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL18A1P39060 OS9-205ENST00000413095 1660 ntTSL 2 BASIC20.96■□□□□ 0.95
COL18A1P39060 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL18A1P39060 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC20.96■□□□□ 0.95
COL18A1P39060 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC20.96■□□□□ 0.95
COL18A1P39060 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL18A1P39060 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC20.96■□□□□ 0.95
COL18A1P39060 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL18A1P39060 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
COL18A1P39060 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL18A1P39060 ACTBP8-201ENST00000403258 1108 ntBASIC20.96■□□□□ 0.95
COL18A1P39060 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
COL18A1P39060 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC20.96■□□□□ 0.95
COL18A1P39060 PARP8-218ENST00000513738 596 ntTSL 4 BASIC20.96■□□□□ 0.95
COL18A1P39060 AP001582.1-201ENST00000525856 295 ntBASIC20.96■□□□□ 0.95
COL18A1P39060 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL18A1P39060 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC20.96■□□□□ 0.95
COL18A1P39060 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC20.96■□□□□ 0.95
COL18A1P39060 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC20.96■□□□□ 0.95
COL18A1P39060 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC20.96■□□□□ 0.95
COL18A1P39060 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
COL18A1P39060 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL18A1P39060 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC20.96■□□□□ 0.95
COL18A1P39060 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL18A1P39060 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC20.96■□□□□ 0.95
COL18A1P39060 AC120498.9-201ENST00000339021 3867 ntBASIC20.96■□□□□ 0.95
COL18A1P39060 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL18A1P39060 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL18A1P39060 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
COL18A1P39060 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL18A1P39060 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL18A1P39060 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC20.95■□□□□ 0.94
COL18A1P39060 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC20.95■□□□□ 0.94
COL18A1P39060 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL18A1P39060 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC20.95■□□□□ 0.94
COL18A1P39060 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL18A1P39060 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC20.95■□□□□ 0.94
COL18A1P39060 FAM197Y7-201ENST00000432892 766 ntBASIC20.95■□□□□ 0.94
COL18A1P39060 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC20.95■□□□□ 0.94
COL18A1P39060 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC20.95■□□□□ 0.94
COL18A1P39060 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC20.95■□□□□ 0.94
COL18A1P39060 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL18A1P39060 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL18A1P39060 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
COL18A1P39060 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC20.95■□□□□ 0.94
COL18A1P39060 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL18A1P39060 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL18A1P39060 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL18A1P39060 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL18A1P39060 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL18A1P39060 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC20.95■□□□□ 0.94
COL18A1P39060 AC105129.2-201ENST00000559536 390 ntBASIC20.95■□□□□ 0.94
COL18A1P39060 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC20.95■□□□□ 0.94
COL18A1P39060 UBL5-208ENST00000593087 320 ntTSL 3 BASIC20.95■□□□□ 0.94
COL18A1P39060 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL18A1P39060 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL18A1P39060 AC005052.1-201ENST00000625181 2492 ntBASIC20.94■□□□□ 0.94
COL18A1P39060 LRRFIP1P1-201ENST00000498774 2246 ntBASIC20.94■□□□□ 0.94
COL18A1P39060 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL18A1P39060 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL18A1P39060 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL18A1P39060 ME2P1-201ENST00000426028 1970 ntBASIC20.94■□□□□ 0.94
COL18A1P39060 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL18A1P39060 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL18A1P39060 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC20.94■□□□□ 0.94
COL18A1P39060 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL18A1P39060 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL18A1P39060 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL18A1P39060 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL18A1P39060 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL18A1P39060 ACKR1-201ENST00000368121 1240 ntBASIC20.94■□□□□ 0.94
COL18A1P39060 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
COL18A1P39060 MIR1202-201ENST00000408529 83 ntBASIC20.94■□□□□ 0.94
COL18A1P39060 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC20.94■□□□□ 0.94
COL18A1P39060 C2orf27AP3-201ENST00000434123 579 ntBASIC20.94■□□□□ 0.94
COL18A1P39060 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC20.94■□□□□ 0.94
COL18A1P39060 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC20.94■□□□□ 0.94
COL18A1P39060 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC20.94■□□□□ 0.94
COL18A1P39060 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC20.94■□□□□ 0.94
COL18A1P39060 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC20.94■□□□□ 0.94
COL18A1P39060 AL354718.3-201ENST00000616414 581 ntBASIC20.94■□□□□ 0.94
COL18A1P39060 CR382287.1-201ENST00000623954 586 ntBASIC20.94■□□□□ 0.94
COL18A1P39060 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL18A1P39060 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL18A1P39060 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
COL18A1P39060 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL18A1P39060 AC018735.1-201ENST00000437208 1502 ntBASIC20.94■□□□□ 0.94
COL18A1P39060 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC20.93■□□□□ 0.94
COL18A1P39060 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
COL18A1P39060 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC20.93■□□□□ 0.94
COL18A1P39060 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
COL18A1P39060 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms