Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.8■□□□□ 0.6
SCN4AP35499 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SCN4AP35499 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SCN4AP35499 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
SCN4AP35499 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SCN4AP35499 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SCN4AP35499 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SCN4AP35499 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SCN4AP35499 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SCN4AP35499 AL133466.1-201ENST00000447582 150 ntBASIC18.79■□□□□ 0.6
SCN4AP35499 COX5BP1-201ENST00000507622 393 ntBASIC18.79■□□□□ 0.6
SCN4AP35499 RNA5SP486-201ENST00000515961 83 ntBASIC18.79■□□□□ 0.6
SCN4AP35499 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SCN4AP35499 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC18.79■□□□□ 0.6
SCN4AP35499 ECM1P1-201ENST00000604092 1279 ntBASIC18.79■□□□□ 0.6
SCN4AP35499 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC18.79■□□□□ 0.6
SCN4AP35499 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SCN4AP35499 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SCN4AP35499 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC18.79■□□□□ 0.6
SCN4AP35499 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SCN4AP35499 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SCN4AP35499 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SCN4AP35499 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC18.79■□□□□ 0.6
SCN4AP35499 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SCN4AP35499 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.79■□□□□ 0.6
SCN4AP35499 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SCN4AP35499 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SCN4AP35499 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
SCN4AP35499 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SCN4AP35499 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
SCN4AP35499 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SCN4AP35499 AP005019.2-201ENST00000615104 511 ntBASIC18.79■□□□□ 0.6
SCN4AP35499 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC18.79■□□□□ 0.6
SCN4AP35499 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC18.79■□□□□ 0.6
SCN4AP35499 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.79■□□□□ 0.6
SCN4AP35499 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SCN4AP35499 ZBTB45P2-201ENST00000452245 1531 ntBASIC18.78■□□□□ 0.6
SCN4AP35499 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN4AP35499 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN4AP35499 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SCN4AP35499 KRT8P35-201ENST00000483942 1338 ntBASIC18.78■□□□□ 0.6
SCN4AP35499 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SCN4AP35499 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN4AP35499 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SCN4AP35499 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN4AP35499 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN4AP35499 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN4AP35499 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN4AP35499 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN4AP35499 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.78■□□□□ 0.6
SCN4AP35499 NDUFAB1P1-201ENST00000404262 460 ntBASIC18.78■□□□□ 0.6
SCN4AP35499 PHKG1P2-201ENST00000457537 863 ntBASIC18.78■□□□□ 0.6
SCN4AP35499 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC18.78■□□□□ 0.6
SCN4AP35499 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
SCN4AP35499 IQSEC3P1-201ENST00000538799 536 ntBASIC18.78■□□□□ 0.6
SCN4AP35499 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC18.78■□□□□ 0.6
SCN4AP35499 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC18.78■□□□□ 0.6
SCN4AP35499 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SCN4AP35499 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC18.78■□□□□ 0.6
SCN4AP35499 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SCN4AP35499 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.78■□□□□ 0.6
SCN4AP35499 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN4AP35499 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
SCN4AP35499 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN4AP35499 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN4AP35499 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
SCN4AP35499 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SCN4AP35499 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.77■□□□□ 0.6
SCN4AP35499 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SCN4AP35499 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC18.77■□□□□ 0.6
SCN4AP35499 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SCN4AP35499 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC18.77■□□□□ 0.6
SCN4AP35499 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC18.77■□□□□ 0.6
SCN4AP35499 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC18.77■□□□□ 0.6
SCN4AP35499 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC18.77■□□□□ 0.6
SCN4AP35499 RN7SL11P-201ENST00000471305 293 ntBASIC18.77■□□□□ 0.6
SCN4AP35499 SUPT4H1P2-201ENST00000501248 353 ntBASIC18.77■□□□□ 0.6
SCN4AP35499 NUP210P1-202ENST00000504322 710 ntBASIC18.77■□□□□ 0.6
SCN4AP35499 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC18.77■□□□□ 0.6
SCN4AP35499 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC18.77■□□□□ 0.6
SCN4AP35499 LINC01144-201ENST00000626198 1710 ntBASIC18.77■□□□□ 0.6
SCN4AP35499 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.77■□□□□ 0.6
SCN4AP35499 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SCN4AP35499 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SCN4AP35499 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC18.77■□□□□ 0.6
SCN4AP35499 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
SCN4AP35499 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.77■□□□□ 0.6
SCN4AP35499 AL603756.1-201ENST00000606511 2163 ntBASIC18.77■□□□□ 0.6
SCN4AP35499 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC18.77■□□□□ 0.6
SCN4AP35499 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.77■□□□□ 0.59
SCN4AP35499 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SCN4AP35499 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SCN4AP35499 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
SCN4AP35499 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SCN4AP35499 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC18.77■□□□□ 0.59
SCN4AP35499 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC18.77■□□□□ 0.59
SCN4AP35499 AC013355.1-201ENST00000562625 723 ntBASIC18.77■□□□□ 0.59
SCN4AP35499 MIR4750-201ENST00000584564 56 ntBASIC18.77■□□□□ 0.59
SCN4AP35499 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.59
SCN4AP35499 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC18.77■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms