Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC12.02□□□□□ -0.49
CKS2P33552 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC12.02□□□□□ -0.49
CKS2P33552 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC12.02□□□□□ -0.49
CKS2P33552 AC011840.4-201ENST00000578471 627 ntBASIC12.02□□□□□ -0.49
CKS2P33552 AD001527.2-201ENST00000622994 785 ntBASIC12.02□□□□□ -0.49
CKS2P33552 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
CKS2P33552 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
CKS2P33552 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
CKS2P33552 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC12.02□□□□□ -0.49
CKS2P33552 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
CKS2P33552 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC12.02□□□□□ -0.49
CKS2P33552 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC12.02□□□□□ -0.49
CKS2P33552 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC12.02□□□□□ -0.49
CKS2P33552 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC12.02□□□□□ -0.49
CKS2P33552 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
CKS2P33552 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 TET3-201ENST00000305799 5174 ntTSL 5 BASIC12.02□□□□□ -0.49
CKS2P33552 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC12.02□□□□□ -0.49
CKS2P33552 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 CICP13-201ENST00000422015 2789 ntBASIC12.01□□□□□ -0.49
CKS2P33552 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC12.01□□□□□ -0.49
CKS2P33552 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC12.01□□□□□ -0.49
CKS2P33552 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 PGR-210ENST00000619228 3038 ntTSL 5 BASIC12.01□□□□□ -0.49
CKS2P33552 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC12.01□□□□□ -0.49
CKS2P33552 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
CKS2P33552 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
CKS2P33552 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC12.01□□□□□ -0.49
CKS2P33552 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC12.01□□□□□ -0.49
CKS2P33552 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
CKS2P33552 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
CKS2P33552 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC12.01□□□□□ -0.49
CKS2P33552 MMP23A-201ENST00000234610 1017 ntBASIC12.01□□□□□ -0.49
CKS2P33552 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 PRORSD1P-201ENST00000295112 541 ntBASIC12.01□□□□□ -0.49
CKS2P33552 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC12.01□□□□□ -0.49
CKS2P33552 MIR935-201ENST00000401179 91 ntBASIC12.01□□□□□ -0.49
CKS2P33552 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
CKS2P33552 GCSHP5-201ENST00000443090 522 ntBASIC12.01□□□□□ -0.49
CKS2P33552 NUS1P1-201ENST00000446295 882 ntBASIC12.01□□□□□ -0.49
CKS2P33552 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC12.01□□□□□ -0.49
CKS2P33552 P4HB-223ENST00000576390 439 ntTSL 4 BASIC12.01□□□□□ -0.49
CKS2P33552 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC12.01□□□□□ -0.49
CKS2P33552 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC12.01□□□□□ -0.49
CKS2P33552 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC12.01□□□□□ -0.49
CKS2P33552 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 UBC-206ENST00000538617 1303 ntTSL 5 BASIC12.01□□□□□ -0.49
CKS2P33552 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC12.01□□□□□ -0.49
CKS2P33552 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
CKS2P33552 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
CKS2P33552 POLL-217ENST00000628479 1953 ntTSL 5 BASIC12.01□□□□□ -0.49
CKS2P33552 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
CKS2P33552 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC12.01□□□□□ -0.49
CKS2P33552 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC12.01□□□□□ -0.49
CKS2P33552 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
CKS2P33552 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CKS2P33552 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC12□□□□□ -0.49
CKS2P33552 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC12□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms