Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC21.27■■□□□ 1
HOXC9P31274 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC21.27■■□□□ 1
HOXC9P31274 ACTG1P3-201ENST00000431775 1114 ntBASIC21.27■■□□□ 1
HOXC9P31274 USP40-206ENST00000443711 628 ntTSL 2 BASIC21.27■■□□□ 1
HOXC9P31274 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC21.27■■□□□ 1
HOXC9P31274 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
HOXC9P31274 AC124283.3-201ENST00000570869 594 ntBASIC21.27■■□□□ 1
HOXC9P31274 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC21.27■■□□□ 1
HOXC9P31274 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC21.27■■□□□ 1
HOXC9P31274 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
HOXC9P31274 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC21.27■■□□□ 1
HOXC9P31274 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC21.27■■□□□ 1
HOXC9P31274 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HOXC9P31274 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
HOXC9P31274 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
HOXC9P31274 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HOXC9P31274 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HOXC9P31274 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HOXC9P31274 AP001282.1-201ENST00000531301 1499 ntBASIC21.26■□□□□ 0.99
HOXC9P31274 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HOXC9P31274 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
HOXC9P31274 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
HOXC9P31274 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
HOXC9P31274 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC21.26■□□□□ 0.99
HOXC9P31274 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HOXC9P31274 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HOXC9P31274 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
HOXC9P31274 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC21.26■□□□□ 0.99
HOXC9P31274 AC136604.1-201ENST00000418535 575 ntBASIC21.26■□□□□ 0.99
HOXC9P31274 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC21.26■□□□□ 0.99
HOXC9P31274 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC21.26■□□□□ 0.99
HOXC9P31274 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC21.26■□□□□ 0.99
HOXC9P31274 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC21.26■□□□□ 0.99
HOXC9P31274 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HOXC9P31274 AC104989.1-201ENST00000519711 778 ntBASIC21.26■□□□□ 0.99
HOXC9P31274 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC21.26■□□□□ 0.99
HOXC9P31274 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC21.26■□□□□ 0.99
HOXC9P31274 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC21.26■□□□□ 0.99
HOXC9P31274 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
HOXC9P31274 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC21.26■□□□□ 0.99
HOXC9P31274 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HOXC9P31274 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC21.26■□□□□ 0.99
HOXC9P31274 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
HOXC9P31274 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
HOXC9P31274 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC21.26■□□□□ 0.99
HOXC9P31274 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC21.26■□□□□ 0.99
HOXC9P31274 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
HOXC9P31274 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HOXC9P31274 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HOXC9P31274 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
HOXC9P31274 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HOXC9P31274 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HOXC9P31274 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HOXC9P31274 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC21.25■□□□□ 0.99
HOXC9P31274 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HOXC9P31274 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC21.25■□□□□ 0.99
HOXC9P31274 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HOXC9P31274 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
HOXC9P31274 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
HOXC9P31274 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HOXC9P31274 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC21.25■□□□□ 0.99
HOXC9P31274 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC21.25■□□□□ 0.99
HOXC9P31274 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC21.25■□□□□ 0.99
HOXC9P31274 PHKG1P2-201ENST00000457537 863 ntBASIC21.25■□□□□ 0.99
HOXC9P31274 SLED1-202ENST00000512051 380 ntBASIC21.25■□□□□ 0.99
HOXC9P31274 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HOXC9P31274 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC21.25■□□□□ 0.99
HOXC9P31274 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC21.25■□□□□ 0.99
HOXC9P31274 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC21.25■□□□□ 0.99
HOXC9P31274 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC21.25■□□□□ 0.99
HOXC9P31274 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HOXC9P31274 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HOXC9P31274 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
HOXC9P31274 REXO1L1P-202ENST00000608646 1974 ntBASIC21.25■□□□□ 0.99
HOXC9P31274 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
HOXC9P31274 PDIA3P1-201ENST00000471856 1510 ntBASIC21.24■□□□□ 0.99
HOXC9P31274 REXO1L6P-201ENST00000603433 1515 ntBASIC21.24■□□□□ 0.99
HOXC9P31274 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
HOXC9P31274 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC21.24■□□□□ 0.99
HOXC9P31274 VILL-207ENST00000465644 1857 ntTSL 5 BASIC21.24■□□□□ 0.99
HOXC9P31274 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HOXC9P31274 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HOXC9P31274 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
HOXC9P31274 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HOXC9P31274 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HOXC9P31274 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
HOXC9P31274 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
HOXC9P31274 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HOXC9P31274 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
HOXC9P31274 MPV17-208ENST00000405076 603 ntTSL 5 BASIC21.24■□□□□ 0.99
HOXC9P31274 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC21.24■□□□□ 0.99
HOXC9P31274 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC21.24■□□□□ 0.99
HOXC9P31274 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC21.24■□□□□ 0.99
HOXC9P31274 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HOXC9P31274 AC092658.1-201ENST00000505836 891 ntBASIC21.24■□□□□ 0.99
HOXC9P31274 MFF-223ENST00000524634 647 ntTSL 2 BASIC21.24■□□□□ 0.99
HOXC9P31274 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HOXC9P31274 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC21.24■□□□□ 0.99
HOXC9P31274 RPS24-214ENST00000613865 538 ntTSL 5 BASIC21.24■□□□□ 0.99
HOXC9P31274 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms