Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC20.02■□□□□ 0.79
COL5A3P25940 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL5A3P25940 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL5A3P25940 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC20.02■□□□□ 0.79
COL5A3P25940 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL5A3P25940 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
COL5A3P25940 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC20.02■□□□□ 0.79
COL5A3P25940 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
COL5A3P25940 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL5A3P25940 Z93015.1-201ENST00000451718 390 ntBASIC20.02■□□□□ 0.79
COL5A3P25940 PFN2-215ENST00000497148 743 ntTSL 4 BASIC20.02■□□□□ 0.79
COL5A3P25940 PARP8-218ENST00000513738 596 ntTSL 4 BASIC20.02■□□□□ 0.79
COL5A3P25940 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.79
COL5A3P25940 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC20.02■□□□□ 0.79
COL5A3P25940 KSR1-207ENST00000578981 748 ntTSL 4 BASIC20.02■□□□□ 0.79
COL5A3P25940 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
COL5A3P25940 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL5A3P25940 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL5A3P25940 OS9-205ENST00000413095 1660 ntTSL 2 BASIC20.01■□□□□ 0.79
COL5A3P25940 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL5A3P25940 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL5A3P25940 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL5A3P25940 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL5A3P25940 CEP83-AS1-201ENST00000623122 2482 ntBASIC20.01■□□□□ 0.79
COL5A3P25940 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL5A3P25940 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
COL5A3P25940 MIR1202-201ENST00000408529 83 ntBASIC20.01■□□□□ 0.79
COL5A3P25940 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC20.01■□□□□ 0.79
COL5A3P25940 GAPDHP40-201ENST00000505218 1006 ntBASIC20.01■□□□□ 0.79
COL5A3P25940 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL5A3P25940 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC20.01■□□□□ 0.79
COL5A3P25940 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC20.01■□□□□ 0.79
COL5A3P25940 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC20.01■□□□□ 0.79
COL5A3P25940 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC20.01■□□□□ 0.79
COL5A3P25940 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC20.01■□□□□ 0.79
COL5A3P25940 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC20.01■□□□□ 0.79
COL5A3P25940 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL5A3P25940 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
COL5A3P25940 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
COL5A3P25940 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL5A3P25940 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL5A3P25940 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL5A3P25940 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL5A3P25940 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL5A3P25940 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL5A3P25940 ME2P1-201ENST00000426028 1970 ntBASIC20■□□□□ 0.79
COL5A3P25940 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
COL5A3P25940 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC20■□□□□ 0.79
COL5A3P25940 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL5A3P25940 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
COL5A3P25940 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL5A3P25940 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL5A3P25940 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC20■□□□□ 0.79
COL5A3P25940 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC20■□□□□ 0.79
COL5A3P25940 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC20■□□□□ 0.79
COL5A3P25940 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
COL5A3P25940 AC105129.2-201ENST00000559536 390 ntBASIC20■□□□□ 0.79
COL5A3P25940 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC20■□□□□ 0.79
COL5A3P25940 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC20■□□□□ 0.79
COL5A3P25940 LRRFIP1P1-201ENST00000498774 2246 ntBASIC20■□□□□ 0.79
COL5A3P25940 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC20■□□□□ 0.79
COL5A3P25940 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC20■□□□□ 0.79
COL5A3P25940 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL5A3P25940 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC20■□□□□ 0.79
COL5A3P25940 AC005052.1-201ENST00000625181 2492 ntBASIC20■□□□□ 0.79
COL5A3P25940 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL5A3P25940 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL5A3P25940 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC19.99■□□□□ 0.79
COL5A3P25940 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A3P25940 AC006001.1-201ENST00000325130 474 ntBASIC19.99■□□□□ 0.79
COL5A3P25940 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A3P25940 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A3P25940 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC19.99■□□□□ 0.79
COL5A3P25940 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A3P25940 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A3P25940 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A3P25940 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC19.99■□□□□ 0.79
COL5A3P25940 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A3P25940 FOS-202ENST00000535987 1402 ntTSL 2 BASIC19.99■□□□□ 0.79
COL5A3P25940 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A3P25940 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A3P25940 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A3P25940 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A3P25940 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A3P25940 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC19.99■□□□□ 0.79
COL5A3P25940 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A3P25940 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A3P25940 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
COL5A3P25940 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
COL5A3P25940 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A3P25940 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A3P25940 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A3P25940 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A3P25940 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A3P25940 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A3P25940 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A3P25940 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A3P25940 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC19.99■□□□□ 0.79
COL5A3P25940 FAM197Y7-201ENST00000432892 766 ntBASIC19.99■□□□□ 0.79
COL5A3P25940 AL591846.1-201ENST00000451736 433 ntBASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms