Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
XRCC1P18887 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.26■□□□□ 0.19
XRCC1P18887 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
XRCC1P18887 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
XRCC1P18887 AC126177.1-201ENST00000547829 2218 ntBASIC16.26■□□□□ 0.19
XRCC1P18887 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
XRCC1P18887 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
XRCC1P18887 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
XRCC1P18887 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
XRCC1P18887 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
XRCC1P18887 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
XRCC1P18887 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.25■□□□□ 0.19
XRCC1P18887 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
XRCC1P18887 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
XRCC1P18887 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.25■□□□□ 0.19
XRCC1P18887 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
XRCC1P18887 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
XRCC1P18887 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
XRCC1P18887 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
XRCC1P18887 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.25■□□□□ 0.19
XRCC1P18887 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
XRCC1P18887 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC16.25■□□□□ 0.19
XRCC1P18887 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
XRCC1P18887 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
XRCC1P18887 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.25■□□□□ 0.19
XRCC1P18887 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.25■□□□□ 0.19
XRCC1P18887 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.25■□□□□ 0.19
XRCC1P18887 AL592309.1-201ENST00000443127 649 ntBASIC16.25■□□□□ 0.19
XRCC1P18887 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
XRCC1P18887 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.25■□□□□ 0.19
XRCC1P18887 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.25■□□□□ 0.19
XRCC1P18887 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.25■□□□□ 0.19
XRCC1P18887 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.25■□□□□ 0.19
XRCC1P18887 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
XRCC1P18887 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.25■□□□□ 0.19
XRCC1P18887 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.25■□□□□ 0.19
XRCC1P18887 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.25■□□□□ 0.19
XRCC1P18887 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.25■□□□□ 0.19
XRCC1P18887 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC16.25■□□□□ 0.19
XRCC1P18887 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
XRCC1P18887 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
XRCC1P18887 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
XRCC1P18887 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.25■□□□□ 0.19
XRCC1P18887 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
XRCC1P18887 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.25■□□□□ 0.19
XRCC1P18887 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
XRCC1P18887 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.25■□□□□ 0.19
XRCC1P18887 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
XRCC1P18887 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.25■□□□□ 0.19
XRCC1P18887 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
XRCC1P18887 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.25■□□□□ 0.19
XRCC1P18887 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
XRCC1P18887 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
XRCC1P18887 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
XRCC1P18887 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
XRCC1P18887 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
XRCC1P18887 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.24■□□□□ 0.19
XRCC1P18887 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
XRCC1P18887 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.24■□□□□ 0.19
XRCC1P18887 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
XRCC1P18887 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.24■□□□□ 0.19
XRCC1P18887 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.24■□□□□ 0.19
XRCC1P18887 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
XRCC1P18887 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.24■□□□□ 0.19
XRCC1P18887 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.24■□□□□ 0.19
XRCC1P18887 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.24■□□□□ 0.19
XRCC1P18887 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.24■□□□□ 0.19
XRCC1P18887 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.24■□□□□ 0.19
XRCC1P18887 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC16.24■□□□□ 0.19
XRCC1P18887 AC023141.5-201ENST00000458585 616 ntBASIC16.24■□□□□ 0.19
XRCC1P18887 HLA-J-203ENST00000494367 1087 ntBASIC16.24■□□□□ 0.19
XRCC1P18887 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
XRCC1P18887 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.24■□□□□ 0.19
XRCC1P18887 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.24■□□□□ 0.19
XRCC1P18887 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.24■□□□□ 0.19
XRCC1P18887 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
XRCC1P18887 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
XRCC1P18887 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
XRCC1P18887 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.24■□□□□ 0.19
XRCC1P18887 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
XRCC1P18887 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
XRCC1P18887 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
XRCC1P18887 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
XRCC1P18887 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
XRCC1P18887 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
XRCC1P18887 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
XRCC1P18887 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
XRCC1P18887 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
XRCC1P18887 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.23■□□□□ 0.19
XRCC1P18887 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.23■□□□□ 0.19
XRCC1P18887 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
XRCC1P18887 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.23■□□□□ 0.19
XRCC1P18887 AC006538.1-201ENST00000567905 1585 ntBASIC16.23■□□□□ 0.19
XRCC1P18887 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
XRCC1P18887 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
XRCC1P18887 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
XRCC1P18887 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
XRCC1P18887 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.23■□□□□ 0.19
XRCC1P18887 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
XRCC1P18887 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms