Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.52■□□□□ 0.24
COL6A3P12111 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL6A3P12111 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
COL6A3P12111 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL6A3P12111 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
COL6A3P12111 AC079178.1-201ENST00000420915 656 ntBASIC16.52■□□□□ 0.24
COL6A3P12111 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
COL6A3P12111 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
COL6A3P12111 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC16.52■□□□□ 0.24
COL6A3P12111 AC116345.2-201ENST00000512837 523 ntBASIC16.52■□□□□ 0.24
COL6A3P12111 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC16.52■□□□□ 0.24
COL6A3P12111 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC16.52■□□□□ 0.24
COL6A3P12111 MIR6858-201ENST00000620733 67 ntBASIC16.52■□□□□ 0.24
COL6A3P12111 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.52■□□□□ 0.24
COL6A3P12111 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL6A3P12111 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL6A3P12111 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.52■□□□□ 0.24
COL6A3P12111 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
COL6A3P12111 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL6A3P12111 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL6A3P12111 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
COL6A3P12111 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC16.52■□□□□ 0.23
COL6A3P12111 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
COL6A3P12111 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC16.52■□□□□ 0.23
COL6A3P12111 AC079112.1-201ENST00000454972 939 ntBASIC16.52■□□□□ 0.23
COL6A3P12111 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
COL6A3P12111 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC16.52■□□□□ 0.23
COL6A3P12111 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC16.52■□□□□ 0.23
COL6A3P12111 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
COL6A3P12111 AL627230.2-201ENST00000613254 655 ntBASIC16.52■□□□□ 0.23
COL6A3P12111 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC16.52■□□□□ 0.23
COL6A3P12111 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
COL6A3P12111 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
COL6A3P12111 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.52■□□□□ 0.23
COL6A3P12111 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.51■□□□□ 0.23
COL6A3P12111 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A3P12111 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
COL6A3P12111 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC16.51■□□□□ 0.23
COL6A3P12111 JPT2-203ENST00000382711 894 ntTSL 4 BASIC16.51■□□□□ 0.23
COL6A3P12111 OARD1-204ENST00000464633 717 ntTSL 2 BASIC16.51■□□□□ 0.23
COL6A3P12111 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC16.51■□□□□ 0.23
COL6A3P12111 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC16.51■□□□□ 0.23
COL6A3P12111 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC16.51■□□□□ 0.23
COL6A3P12111 AL805961.1-203ENST00000641078 1258 ntBASIC16.51■□□□□ 0.23
COL6A3P12111 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A3P12111 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A3P12111 AC074138.1-201ENST00000611182 1303 ntBASIC16.51■□□□□ 0.23
COL6A3P12111 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A3P12111 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
COL6A3P12111 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.51■□□□□ 0.23
COL6A3P12111 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A3P12111 RTN3P1-201ENST00000536295 711 ntBASIC16.51■□□□□ 0.23
COL6A3P12111 AC242376.1-201ENST00000559033 726 ntBASIC16.51■□□□□ 0.23
COL6A3P12111 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.51■□□□□ 0.23
COL6A3P12111 AL161773.1-201ENST00000624845 863 ntBASIC16.51■□□□□ 0.23
COL6A3P12111 DDX5-235ENST00000630471 473 ntTSL 4 BASIC16.51■□□□□ 0.23
COL6A3P12111 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC16.51■□□□□ 0.23
COL6A3P12111 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC16.51■□□□□ 0.23
COL6A3P12111 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A3P12111 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A3P12111 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A3P12111 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A3P12111 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A3P12111 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC16.5■□□□□ 0.23
COL6A3P12111 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC16.5■□□□□ 0.23
COL6A3P12111 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC16.5■□□□□ 0.23
COL6A3P12111 ALG1L6P-201ENST00000515248 758 ntBASIC16.5■□□□□ 0.23
COL6A3P12111 AC012044.1-201ENST00000603431 297 ntBASIC16.5■□□□□ 0.23
COL6A3P12111 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
COL6A3P12111 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
COL6A3P12111 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A3P12111 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A3P12111 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
COL6A3P12111 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A3P12111 SLC16A6P1-201ENST00000413214 1059 ntBASIC16.5■□□□□ 0.23
COL6A3P12111 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC16.5■□□□□ 0.23
COL6A3P12111 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
COL6A3P12111 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A3P12111 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A3P12111 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A3P12111 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A3P12111 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A3P12111 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC16.5■□□□□ 0.23
COL6A3P12111 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
COL6A3P12111 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.5■□□□□ 0.23
COL6A3P12111 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
COL6A3P12111 MPV17-205ENST00000402310 906 ntTSL 5 BASIC16.5■□□□□ 0.23
COL6A3P12111 HNRNPA1P63-201ENST00000427917 963 ntBASIC16.5■□□□□ 0.23
COL6A3P12111 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A3P12111 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
COL6A3P12111 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC16.5■□□□□ 0.23
COL6A3P12111 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A3P12111 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A3P12111 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.5■□□□□ 0.23
COL6A3P12111 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A3P12111 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A3P12111 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC16.5■□□□□ 0.23
COL6A3P12111 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A3P12111 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A3P12111 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms