Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SDCBPO00560 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SDCBPO00560 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC13.9□□□□□ -0.18
SDCBPO00560 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
SDCBPO00560 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
SDCBPO00560 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.19
SDCBPO00560 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC13.9□□□□□ -0.19
SDCBPO00560 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC13.9□□□□□ -0.19
SDCBPO00560 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.19
SDCBPO00560 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
SDCBPO00560 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC13.89□□□□□ -0.19
SDCBPO00560 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SDCBPO00560 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
SDCBPO00560 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SDCBPO00560 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SDCBPO00560 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
SDCBPO00560 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SDCBPO00560 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
SDCBPO00560 AC004870.1-201ENST00000315132 882 ntBASIC13.89□□□□□ -0.19
SDCBPO00560 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SDCBPO00560 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
SDCBPO00560 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC13.89□□□□□ -0.19
SDCBPO00560 POU5F1P6-201ENST00000466990 990 ntBASIC13.89□□□□□ -0.19
SDCBPO00560 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SDCBPO00560 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC13.89□□□□□ -0.19
SDCBPO00560 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC13.89□□□□□ -0.19
SDCBPO00560 AC008735.5-201ENST00000623544 497 ntBASIC13.89□□□□□ -0.19
SDCBPO00560 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
SDCBPO00560 LINC02228-204ENST00000642115 2962 ntBASIC13.89□□□□□ -0.19
SDCBPO00560 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC13.89□□□□□ -0.19
SDCBPO00560 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SDCBPO00560 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SDCBPO00560 LINC01144-201ENST00000626198 1710 ntBASIC13.89□□□□□ -0.19
SDCBPO00560 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SDCBPO00560 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC13.89□□□□□ -0.19
SDCBPO00560 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
SDCBPO00560 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
SDCBPO00560 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC13.89□□□□□ -0.19
SDCBPO00560 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC13.89□□□□□ -0.19
SDCBPO00560 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SDCBPO00560 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC13.89□□□□□ -0.19
SDCBPO00560 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
SDCBPO00560 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC13.89□□□□□ -0.19
SDCBPO00560 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SDCBPO00560 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC13.89□□□□□ -0.19
SDCBPO00560 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SDCBPO00560 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SDCBPO00560 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SDCBPO00560 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SDCBPO00560 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SDCBPO00560 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SDCBPO00560 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SDCBPO00560 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
SDCBPO00560 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SDCBPO00560 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SDCBPO00560 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SDCBPO00560 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC13.88□□□□□ -0.19
SDCBPO00560 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC13.88□□□□□ -0.19
SDCBPO00560 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC13.88□□□□□ -0.19
SDCBPO00560 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SDCBPO00560 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC13.88□□□□□ -0.19
SDCBPO00560 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
SDCBPO00560 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SDCBPO00560 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC13.88□□□□□ -0.19
SDCBPO00560 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC13.88□□□□□ -0.19
SDCBPO00560 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SDCBPO00560 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SDCBPO00560 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC13.88□□□□□ -0.19
SDCBPO00560 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC13.88□□□□□ -0.19
SDCBPO00560 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC13.88□□□□□ -0.19
SDCBPO00560 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC13.88□□□□□ -0.19
SDCBPO00560 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
SDCBPO00560 KRT18P27-201ENST00000427733 1299 ntBASIC13.88□□□□□ -0.19
SDCBPO00560 KRT18P67-201ENST00000432816 1264 ntBASIC13.88□□□□□ -0.19
SDCBPO00560 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SDCBPO00560 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
SDCBPO00560 AC105339.3-201ENST00000560043 636 ntBASIC13.88□□□□□ -0.19
SDCBPO00560 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SDCBPO00560 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SDCBPO00560 IRF5-214ENST00000613821 595 ntTSL 5 BASIC13.88□□□□□ -0.19
SDCBPO00560 AL691432.3-201ENST00000621860 400 ntBASIC13.88□□□□□ -0.19
SDCBPO00560 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
SDCBPO00560 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SDCBPO00560 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SDCBPO00560 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SDCBPO00560 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC13.88□□□□□ -0.19
SDCBPO00560 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
SDCBPO00560 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC13.88□□□□□ -0.19
SDCBPO00560 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
SDCBPO00560 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC13.88□□□□□ -0.19
SDCBPO00560 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC13.88□□□□□ -0.19
SDCBPO00560 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SDCBPO00560 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SDCBPO00560 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC13.88□□□□□ -0.19
SDCBPO00560 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SDCBPO00560 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SDCBPO00560 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC13.88□□□□□ -0.19
SDCBPO00560 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC13.88□□□□□ -0.19
SDCBPO00560 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SDCBPO00560 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms