Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 MST1L-201ENST00000442552 2185 ntBASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 GPX1P2-201ENST00000429271 606 ntBASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 AC140658.5-201ENST00000438532 169 ntBASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 RNA5SP415-201ENST00000517246 115 ntBASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 IGHV3-22-201ENST00000520721 359 ntBASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 EHF-205ENST00000527935 557 ntTSL 2 BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 AC023824.1-201ENST00000562945 2975 ntBASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 AP003680.1-201ENST00000598970 3660 ntBASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 CICP13-201ENST00000422015 2789 ntBASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 AC006486.2-201ENST00000624246 2199 ntBASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 AL513477.1-201ENST00000602865 2407 ntBASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 AP001282.1-201ENST00000531301 1499 ntBASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 GSN-206ENST00000394353 2311 ntTSL 2 BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMA1Q9UHB6 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
LIMA1Q9UHB6 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms