Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 HARS-204ENST00000438307 1789 ntTSL 2 BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 AC117500.6-201ENST00000624871 588 ntBASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 AP001350.2-201ENST00000625104 1094 ntBASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 SUPT20HL2-201ENST00000486479 2409 ntBASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 GOLGA8DP-202ENST00000341390 2184 ntBASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 PMS2P1-201ENST00000431037 1228 ntBASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 AC108073.2-201ENST00000464002 357 ntBASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 AL662844.1-201ENST00000546340 181 ntBASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 AC004790.2-201ENST00000623588 572 ntBASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC18.9■□□□□ 0.62
CCDC39Q9UFE4 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CCDC39Q9UFE4 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.62
CCDC39Q9UFE4 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.62
CCDC39Q9UFE4 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.62
CCDC39Q9UFE4 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 MRPL3P1-201ENST00000400109 1033 ntBASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 AP001005.1-201ENST00000571755 1248 ntBASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 AL049840.3-201ENST00000602669 611 ntBASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 MIR7706-201ENST00000613747 67 ntBASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms