Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.43■□□□□ 0.38
CNTN3Q9P232 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
CNTN3Q9P232 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CNTN3Q9P232 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CNTN3Q9P232 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
CNTN3Q9P232 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CNTN3Q9P232 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC17.42■□□□□ 0.38
CNTN3Q9P232 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CNTN3Q9P232 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CNTN3Q9P232 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CNTN3Q9P232 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.42■□□□□ 0.38
CNTN3Q9P232 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC17.42■□□□□ 0.38
CNTN3Q9P232 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.42■□□□□ 0.38
CNTN3Q9P232 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CNTN3Q9P232 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC17.42■□□□□ 0.38
CNTN3Q9P232 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC17.42■□□□□ 0.38
CNTN3Q9P232 PRR29-204ENST00000577953 565 ntTSL 4 BASIC17.42■□□□□ 0.38
CNTN3Q9P232 AC138761.1-201ENST00000584393 385 ntBASIC17.42■□□□□ 0.38
CNTN3Q9P232 LINC02560-201ENST00000596379 459 ntBASIC17.42■□□□□ 0.38
CNTN3Q9P232 AL033527.5-202ENST00000641632 1098 ntBASIC17.42■□□□□ 0.38
CNTN3Q9P232 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.42■□□□□ 0.38
CNTN3Q9P232 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CNTN3Q9P232 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CNTN3Q9P232 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CNTN3Q9P232 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
CNTN3Q9P232 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CNTN3Q9P232 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CNTN3Q9P232 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC17.42■□□□□ 0.38
CNTN3Q9P232 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CNTN3Q9P232 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CNTN3Q9P232 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CNTN3Q9P232 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC17.42■□□□□ 0.38
CNTN3Q9P232 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
CNTN3Q9P232 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CNTN3Q9P232 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CNTN3Q9P232 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CNTN3Q9P232 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.41■□□□□ 0.38
CNTN3Q9P232 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CNTN3Q9P232 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CNTN3Q9P232 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CNTN3Q9P232 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CNTN3Q9P232 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CNTN3Q9P232 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.41■□□□□ 0.38
CNTN3Q9P232 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CNTN3Q9P232 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CNTN3Q9P232 AC004987.2-201ENST00000395959 1148 ntBASIC17.41■□□□□ 0.38
CNTN3Q9P232 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC17.41■□□□□ 0.38
CNTN3Q9P232 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CNTN3Q9P232 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CNTN3Q9P232 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CNTN3Q9P232 TERF1P3-201ENST00000505638 1227 ntBASIC17.41■□□□□ 0.38
CNTN3Q9P232 SERBP1P5-201ENST00000510079 1181 ntBASIC17.41■□□□□ 0.38
CNTN3Q9P232 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CNTN3Q9P232 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC17.41■□□□□ 0.38
CNTN3Q9P232 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC17.41■□□□□ 0.38
CNTN3Q9P232 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
CNTN3Q9P232 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC17.41■□□□□ 0.38
CNTN3Q9P232 AC009118.2-201ENST00000613275 655 ntBASIC17.41■□□□□ 0.38
CNTN3Q9P232 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CNTN3Q9P232 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CNTN3Q9P232 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CNTN3Q9P232 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
CNTN3Q9P232 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CNTN3Q9P232 AC006449.6-201ENST00000612330 2296 ntBASIC17.41■□□□□ 0.38
CNTN3Q9P232 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CNTN3Q9P232 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CNTN3Q9P232 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CNTN3Q9P232 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CNTN3Q9P232 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CNTN3Q9P232 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CNTN3Q9P232 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CNTN3Q9P232 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CNTN3Q9P232 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CNTN3Q9P232 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CNTN3Q9P232 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CNTN3Q9P232 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 BTBD7P1-201ENST00000447253 1453 ntBASIC17.4■□□□□ 0.38
CNTN3Q9P232 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CNTN3Q9P232 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CNTN3Q9P232 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CNTN3Q9P232 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CNTN3Q9P232 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 HIST3H2BA-201ENST00000436555 524 ntBASIC17.4■□□□□ 0.38
CNTN3Q9P232 EEF1DP4-201ENST00000446006 880 ntBASIC17.4■□□□□ 0.38
CNTN3Q9P232 TMPRSS11CP-201ENST00000453277 683 ntBASIC17.4■□□□□ 0.38
CNTN3Q9P232 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms