Protein–RNA interactions for Protein: Q9HCM3

KIAA1549, UPF0606 protein KIAA1549, humanhuman

Predictions only

Length 1,950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KIAA1549Q9HCM3 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC14.38□□□□□ -0.11
KIAA1549Q9HCM3 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.38□□□□□ -0.11
KIAA1549Q9HCM3 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.38□□□□□ -0.11
KIAA1549Q9HCM3 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC14.38□□□□□ -0.11
KIAA1549Q9HCM3 KRT8P37-201ENST00000451609 1420 ntBASIC14.38□□□□□ -0.11
KIAA1549Q9HCM3 TAF8-206ENST00000472818 719 ntTSL 2 BASIC14.38□□□□□ -0.11
KIAA1549Q9HCM3 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
KIAA1549Q9HCM3 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC14.38□□□□□ -0.11
KIAA1549Q9HCM3 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
KIAA1549Q9HCM3 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.38□□□□□ -0.11
KIAA1549Q9HCM3 DOC2GP-204ENST00000639052 2548 ntBASIC14.38□□□□□ -0.11
KIAA1549Q9HCM3 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
KIAA1549Q9HCM3 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
KIAA1549Q9HCM3 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 SLC7A15P-201ENST00000424028 1363 ntBASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 AC005034.1-201ENST00000426657 489 ntBASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 AC135586.1-201ENST00000539323 574 ntBASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 VILL-207ENST00000465644 1857 ntTSL 5 BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
KIAA1549Q9HCM3 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 METTL26-204ENST00000397665 558 ntTSL 2 BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 PIN1P1-201ENST00000412108 996 ntBASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 AC026691.1-201ENST00000602502 2017 ntBASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 AC069224.1-201ENST00000566372 1715 ntBASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 RN7SL618P-201ENST00000477850 296 ntBASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 CHCHD2P3-201ENST00000603038 451 ntBASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 CECR7-204ENST00000609932 568 ntTSL 2 BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
KIAA1549Q9HCM3 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
KIAA1549Q9HCM3 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms