Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RNF41Q9H4P4 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RNF41Q9H4P4 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC19.14■□□□□ 0.65
RNF41Q9H4P4 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RNF41Q9H4P4 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC19.14■□□□□ 0.65
RNF41Q9H4P4 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC19.14■□□□□ 0.65
RNF41Q9H4P4 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
RNF41Q9H4P4 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC19.14■□□□□ 0.65
RNF41Q9H4P4 RN7SL828P-201ENST00000607615 303 ntBASIC19.14■□□□□ 0.65
RNF41Q9H4P4 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RNF41Q9H4P4 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RNF41Q9H4P4 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
RNF41Q9H4P4 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RNF41Q9H4P4 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
RNF41Q9H4P4 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
RNF41Q9H4P4 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RNF41Q9H4P4 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RNF41Q9H4P4 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC19.14■□□□□ 0.65
RNF41Q9H4P4 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC19.14■□□□□ 0.65
RNF41Q9H4P4 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 HLA-DRB6-201ENST00000411500 1235 ntBASIC19.13■□□□□ 0.65
RNF41Q9H4P4 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 CCDC74BP1-201ENST00000508880 1123 ntBASIC19.13■□□□□ 0.65
RNF41Q9H4P4 AC106028.4-201ENST00000614509 607 ntBASIC19.13■□□□□ 0.65
RNF41Q9H4P4 ORC5-208ENST00000626700 344 ntTSL 3 BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC19.13■□□□□ 0.65
RNF41Q9H4P4 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 RPS19-201ENST00000221975 500 ntTSL 3 BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 AC243562.2-201ENST00000561247 970 ntBASIC19.12■□□□□ 0.65
RNF41Q9H4P4 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC19.12■□□□□ 0.65
RNF41Q9H4P4 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC19.11■□□□□ 0.65
RNF41Q9H4P4 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC19.11■□□□□ 0.65
RNF41Q9H4P4 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
RNF41Q9H4P4 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms