Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC42Q96M95 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC42Q96M95 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC42Q96M95 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CCDC42Q96M95 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CCDC42Q96M95 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CCDC42Q96M95 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC42Q96M95 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC42Q96M95 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC42Q96M95 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC42Q96M95 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CCDC42Q96M95 MRPL20P1-201ENST00000400819 433 ntBASIC17.6■□□□□ 0.41
CCDC42Q96M95 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC42Q96M95 AC073648.2-201ENST00000510116 352 ntBASIC17.6■□□□□ 0.41
CCDC42Q96M95 TBCB-205ENST00000585746 875 ntTSL 3 BASIC17.6■□□□□ 0.41
CCDC42Q96M95 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC42Q96M95 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC17.6■□□□□ 0.41
CCDC42Q96M95 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC42Q96M95 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC42Q96M95 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC42Q96M95 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
CCDC42Q96M95 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC42Q96M95 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC42Q96M95 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC42Q96M95 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC42Q96M95 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC42Q96M95 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC42Q96M95 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CCDC42Q96M95 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC42Q96M95 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC42Q96M95 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC42Q96M95 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CCDC42Q96M95 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC17.6■□□□□ 0.41
CCDC42Q96M95 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC42Q96M95 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC42Q96M95 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC42Q96M95 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC42Q96M95 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC42Q96M95 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC42Q96M95 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC42Q96M95 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
CCDC42Q96M95 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC42Q96M95 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC42Q96M95 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC17.59■□□□□ 0.41
CCDC42Q96M95 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC42Q96M95 AC092919.2-201ENST00000623631 1645 ntBASIC17.59■□□□□ 0.41
CCDC42Q96M95 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC42Q96M95 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC42Q96M95 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC42Q96M95 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CCDC42Q96M95 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC42Q96M95 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC42Q96M95 VMO1-203ENST00000416307 712 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC42Q96M95 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CCDC42Q96M95 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
CCDC42Q96M95 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
CCDC42Q96M95 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CCDC42Q96M95 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC42Q96M95 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC42Q96M95 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CCDC42Q96M95 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC42Q96M95 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC42Q96M95 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC17.59■□□□□ 0.41
CCDC42Q96M95 AL513477.1-201ENST00000602865 2407 ntBASIC17.59■□□□□ 0.41
CCDC42Q96M95 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC42Q96M95 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC42Q96M95 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC42Q96M95 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC17.59■□□□□ 0.41
CCDC42Q96M95 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC42Q96M95 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC42Q96M95 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.58■□□□□ 0.41
CCDC42Q96M95 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC17.58■□□□□ 0.41
CCDC42Q96M95 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
CCDC42Q96M95 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC17.58■□□□□ 0.41
CCDC42Q96M95 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC42Q96M95 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC17.58■□□□□ 0.41
CCDC42Q96M95 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC42Q96M95 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.58■□□□□ 0.41
CCDC42Q96M95 PPT1-215ENST00000641471 2368 ntBASIC17.58■□□□□ 0.41
CCDC42Q96M95 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CCDC42Q96M95 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
CCDC42Q96M95 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC42Q96M95 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC17.58■□□□□ 0.4
CCDC42Q96M95 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC42Q96M95 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC17.58■□□□□ 0.4
CCDC42Q96M95 LCK-206ENST00000373564 2137 ntTSL 5 BASIC17.58■□□□□ 0.4
CCDC42Q96M95 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
CCDC42Q96M95 RNU1-129P-201ENST00000384064 167 ntBASIC17.58■□□□□ 0.4
CCDC42Q96M95 FAM185BP-201ENST00000443595 716 ntBASIC17.58■□□□□ 0.4
CCDC42Q96M95 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.58■□□□□ 0.4
CCDC42Q96M95 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC17.58■□□□□ 0.4
CCDC42Q96M95 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC42Q96M95 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC42Q96M95 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC17.58■□□□□ 0.4
CCDC42Q96M95 U1.21-201ENST00000580816 167 ntBASIC17.58■□□□□ 0.4
CCDC42Q96M95 AL356488.2-201ENST00000602755 427 ntBASIC17.58■□□□□ 0.4
CCDC42Q96M95 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.58■□□□□ 0.4
CCDC42Q96M95 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.58■□□□□ 0.4
CCDC42Q96M95 AC008735.5-201ENST00000623544 497 ntBASIC17.58■□□□□ 0.4
CCDC42Q96M95 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms