Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.66■□□□□ 0.1
VMP1Q96GC9 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC15.66■□□□□ 0.1
VMP1Q96GC9 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
VMP1Q96GC9 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VMP1Q96GC9 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
VMP1Q96GC9 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VMP1Q96GC9 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.66■□□□□ 0.1
VMP1Q96GC9 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
VMP1Q96GC9 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
VMP1Q96GC9 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
VMP1Q96GC9 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VMP1Q96GC9 AC131009.4-201ENST00000624048 1740 ntBASIC15.65■□□□□ 0.1
VMP1Q96GC9 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
VMP1Q96GC9 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.65■□□□□ 0.1
VMP1Q96GC9 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.65■□□□□ 0.1
VMP1Q96GC9 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC15.65■□□□□ 0.1
VMP1Q96GC9 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
VMP1Q96GC9 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.65■□□□□ 0.1
VMP1Q96GC9 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
VMP1Q96GC9 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.65■□□□□ 0.1
VMP1Q96GC9 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.65■□□□□ 0.1
VMP1Q96GC9 AC112191.1-201ENST00000523689 701 ntBASIC15.65■□□□□ 0.1
VMP1Q96GC9 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
VMP1Q96GC9 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.65■□□□□ 0.1
VMP1Q96GC9 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC15.65■□□□□ 0.1
VMP1Q96GC9 AL078644.1-201ENST00000609881 752 ntBASIC15.65■□□□□ 0.1
VMP1Q96GC9 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
VMP1Q96GC9 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
VMP1Q96GC9 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC15.65■□□□□ 0.1
VMP1Q96GC9 TCAF2P1-201ENST00000291129 2421 ntBASIC15.65■□□□□ 0.1
VMP1Q96GC9 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC15.65■□□□□ 0.1
VMP1Q96GC9 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
VMP1Q96GC9 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
VMP1Q96GC9 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.1
VMP1Q96GC9 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VMP1Q96GC9 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC15.64■□□□□ 0.09
VMP1Q96GC9 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
VMP1Q96GC9 SLC22A20-204ENST00000530038 1673 ntBASIC15.64■□□□□ 0.09
VMP1Q96GC9 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
VMP1Q96GC9 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VMP1Q96GC9 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
VMP1Q96GC9 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.64■□□□□ 0.09
VMP1Q96GC9 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
VMP1Q96GC9 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
VMP1Q96GC9 HMGA1P7-201ENST00000406908 502 ntBASIC15.64■□□□□ 0.09
VMP1Q96GC9 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VMP1Q96GC9 HTR5BP-201ENST00000430851 1154 ntBASIC15.64■□□□□ 0.09
VMP1Q96GC9 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VMP1Q96GC9 FAM58CP-201ENST00000435741 640 ntBASIC15.64■□□□□ 0.09
VMP1Q96GC9 AC140658.5-201ENST00000438532 169 ntBASIC15.64■□□□□ 0.09
VMP1Q96GC9 ALG1L5P-201ENST00000482043 771 ntBASIC15.64■□□□□ 0.09
VMP1Q96GC9 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.64■□□□□ 0.09
VMP1Q96GC9 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
VMP1Q96GC9 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
VMP1Q96GC9 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC15.64■□□□□ 0.09
VMP1Q96GC9 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC15.64■□□□□ 0.09
VMP1Q96GC9 THTPA-204ENST00000554970 569 ntTSL 4 BASIC15.64■□□□□ 0.09
VMP1Q96GC9 THTPA-206ENST00000556015 535 ntTSL 3 BASIC15.64■□□□□ 0.09
VMP1Q96GC9 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VMP1Q96GC9 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
VMP1Q96GC9 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
VMP1Q96GC9 WT1-AS_2.1-201ENST00000613208 137 ntBASIC15.64■□□□□ 0.09
VMP1Q96GC9 AC139530.3-201ENST00000620344 690 ntBASIC15.64■□□□□ 0.09
VMP1Q96GC9 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
VMP1Q96GC9 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
VMP1Q96GC9 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
VMP1Q96GC9 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
VMP1Q96GC9 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
VMP1Q96GC9 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC15.64■□□□□ 0.09
VMP1Q96GC9 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
VMP1Q96GC9 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
VMP1Q96GC9 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VMP1Q96GC9 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.64■□□□□ 0.09
VMP1Q96GC9 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms