Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 AC005915.1-201ENST00000624912 2018 ntBASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.78■□□□□ 0.12
CLIP3Q96DZ5 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 TUBB3P1-201ENST00000405796 1332 ntBASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 SPDYE7P-202ENST00000420373 878 ntBASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 GPS2P2-201ENST00000430745 888 ntBASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 AC069262.1-201ENST00000539058 672 ntBASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 AC092364.2-202ENST00000597012 1073 ntBASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC15.77■□□□□ 0.12
CLIP3Q96DZ5 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CLIP3Q96DZ5 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
CLIP3Q96DZ5 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CLIP3Q96DZ5 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CLIP3Q96DZ5 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CLIP3Q96DZ5 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CLIP3Q96DZ5 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC15.77■□□□□ 0.11
CLIP3Q96DZ5 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC15.77■□□□□ 0.11
CLIP3Q96DZ5 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CLIP3Q96DZ5 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CLIP3Q96DZ5 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CLIP3Q96DZ5 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CLIP3Q96DZ5 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC15.77■□□□□ 0.11
CLIP3Q96DZ5 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CLIP3Q96DZ5 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CLIP3Q96DZ5 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CLIP3Q96DZ5 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.77■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 125.3 ms