Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
TTC28Q96AY4 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TTC28Q96AY4 AC011742.3-201ENST00000439053 820 ntBASIC16.14■□□□□ 0.17
TTC28Q96AY4 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC16.14■□□□□ 0.17
TTC28Q96AY4 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TTC28Q96AY4 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.14■□□□□ 0.17
TTC28Q96AY4 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC16.14■□□□□ 0.17
TTC28Q96AY4 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.14■□□□□ 0.17
TTC28Q96AY4 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TTC28Q96AY4 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TTC28Q96AY4 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TTC28Q96AY4 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
TTC28Q96AY4 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TTC28Q96AY4 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TTC28Q96AY4 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TTC28Q96AY4 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC16.13■□□□□ 0.17
TTC28Q96AY4 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC16.13■□□□□ 0.17
TTC28Q96AY4 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TTC28Q96AY4 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TTC28Q96AY4 AC242376.1-201ENST00000559033 726 ntBASIC16.13■□□□□ 0.17
TTC28Q96AY4 ECM1P1-201ENST00000604092 1279 ntBASIC16.13■□□□□ 0.17
TTC28Q96AY4 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC16.13■□□□□ 0.17
TTC28Q96AY4 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
TTC28Q96AY4 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TTC28Q96AY4 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
TTC28Q96AY4 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TTC28Q96AY4 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
TTC28Q96AY4 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TTC28Q96AY4 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC16.13■□□□□ 0.17
TTC28Q96AY4 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TTC28Q96AY4 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TTC28Q96AY4 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
TTC28Q96AY4 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
TTC28Q96AY4 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
TTC28Q96AY4 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TTC28Q96AY4 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
TTC28Q96AY4 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
TTC28Q96AY4 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
TTC28Q96AY4 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.13■□□□□ 0.17
TTC28Q96AY4 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TTC28Q96AY4 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TTC28Q96AY4 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TTC28Q96AY4 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC16.13■□□□□ 0.17
TTC28Q96AY4 BUD31-205ENST00000456893 512 ntTSL 5 BASIC16.13■□□□□ 0.17
TTC28Q96AY4 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC16.13■□□□□ 0.17
TTC28Q96AY4 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
TTC28Q96AY4 SYT17-208ENST00000568433 812 ntTSL 3 BASIC16.13■□□□□ 0.17
TTC28Q96AY4 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC16.13■□□□□ 0.17
TTC28Q96AY4 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC16.13■□□□□ 0.17
TTC28Q96AY4 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
TTC28Q96AY4 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TTC28Q96AY4 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TTC28Q96AY4 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
TTC28Q96AY4 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC16.13■□□□□ 0.17
TTC28Q96AY4 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TTC28Q96AY4 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.13■□□□□ 0.17
TTC28Q96AY4 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
TTC28Q96AY4 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TTC28Q96AY4 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TTC28Q96AY4 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
TTC28Q96AY4 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TTC28Q96AY4 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.12■□□□□ 0.17
TTC28Q96AY4 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC16.12■□□□□ 0.17
TTC28Q96AY4 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC16.12■□□□□ 0.17
TTC28Q96AY4 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC16.12■□□□□ 0.17
TTC28Q96AY4 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
TTC28Q96AY4 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TTC28Q96AY4 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC16.12■□□□□ 0.17
TTC28Q96AY4 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TTC28Q96AY4 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC16.12■□□□□ 0.17
TTC28Q96AY4 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
TTC28Q96AY4 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.12■□□□□ 0.17
TTC28Q96AY4 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
TTC28Q96AY4 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TTC28Q96AY4 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TTC28Q96AY4 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
TTC28Q96AY4 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
TTC28Q96AY4 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TTC28Q96AY4 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TTC28Q96AY4 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TTC28Q96AY4 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TTC28Q96AY4 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC16.12■□□□□ 0.17
TTC28Q96AY4 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TTC28Q96AY4 FOS-204ENST00000554617 796 ntTSL 2 BASIC16.12■□□□□ 0.17
TTC28Q96AY4 MIR6816-201ENST00000620368 66 ntBASIC16.12■□□□□ 0.17
TTC28Q96AY4 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.12■□□□□ 0.17
TTC28Q96AY4 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
TTC28Q96AY4 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TTC28Q96AY4 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TTC28Q96AY4 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TTC28Q96AY4 SNX33P1-201ENST00000592116 1762 ntBASIC16.12■□□□□ 0.17
TTC28Q96AY4 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TTC28Q96AY4 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TTC28Q96AY4 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TTC28Q96AY4 OARD1-204ENST00000464633 717 ntTSL 2 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 MARK2P5-201ENST00000507649 634 ntBASIC16.11■□□□□ 0.17
TTC28Q96AY4 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms