Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 PPT1-213ENST00000641319 2388 ntBASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 AC116562.2-201ENST00000507042 360 ntBASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 AC008550.1-201ENST00000511500 884 ntBASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 PENK-204ENST00000518770 863 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 MIR4785-201ENST00000585005 73 ntBASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 AC113410.3-201ENST00000623366 203 ntBASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 AC097637.2-201ENST00000624096 1997 ntBASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28AQ8IWP9 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 AC136759.1-202ENST00000530858 2194 ntBASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 AC131902.2-201ENST00000566892 2172 ntBASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 MEST-204ENST00000393187 2380 ntAPPRIS ALT1 TSL 5 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 GPI-205ENST00000586425 1799 ntTSL 5 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 MDFI-202ENST00000373050 809 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 CRYGFP-201ENST00000418459 633 ntBASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 AC009065.1-201ENST00000564055 1225 ntBASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 SP100-205ENST00000409824 1802 ntTSL 5 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 120.8 ms