Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
RFX4Q33E94 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
RFX4Q33E94 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
RFX4Q33E94 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC15.21■□□□□ 0.02
RFX4Q33E94 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC15.21■□□□□ 0.02
RFX4Q33E94 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
RFX4Q33E94 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
RFX4Q33E94 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
RFX4Q33E94 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
RFX4Q33E94 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
RFX4Q33E94 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC15.2■□□□□ 0.02
RFX4Q33E94 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC15.2■□□□□ 0.02
RFX4Q33E94 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFX4Q33E94 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
RFX4Q33E94 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFX4Q33E94 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFX4Q33E94 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.2■□□□□ 0.02
RFX4Q33E94 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX4Q33E94 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.2■□□□□ 0.02
RFX4Q33E94 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
RFX4Q33E94 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX4Q33E94 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX4Q33E94 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX4Q33E94 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX4Q33E94 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX4Q33E94 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.2■□□□□ 0.02
RFX4Q33E94 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
RFX4Q33E94 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
RFX4Q33E94 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.2■□□□□ 0.02
RFX4Q33E94 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
RFX4Q33E94 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFX4Q33E94 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFX4Q33E94 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX4Q33E94 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFX4Q33E94 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC15.2■□□□□ 0.02
RFX4Q33E94 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC15.2■□□□□ 0.02
RFX4Q33E94 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC15.2■□□□□ 0.02
RFX4Q33E94 AC091167.2-201ENST00000579581 588 ntBASIC15.2■□□□□ 0.02
RFX4Q33E94 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.2■□□□□ 0.02
RFX4Q33E94 NKAPP1-205ENST00000585790 367 ntBASIC15.2■□□□□ 0.02
RFX4Q33E94 AC138894.3-201ENST00000603787 634 ntBASIC15.2■□□□□ 0.02
RFX4Q33E94 AC020765.3-201ENST00000613051 740 ntBASIC15.2■□□□□ 0.02
RFX4Q33E94 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC15.2■□□□□ 0.02
RFX4Q33E94 AL589182.2-201ENST00000619332 1049 ntBASIC15.2■□□□□ 0.02
RFX4Q33E94 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
RFX4Q33E94 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.2■□□□□ 0.02
RFX4Q33E94 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.2■□□□□ 0.02
RFX4Q33E94 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX4Q33E94 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX4Q33E94 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX4Q33E94 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC15.2■□□□□ 0.02
RFX4Q33E94 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
RFX4Q33E94 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFX4Q33E94 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX4Q33E94 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFX4Q33E94 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
RFX4Q33E94 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX4Q33E94 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFX4Q33E94 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX4Q33E94 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX4Q33E94 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX4Q33E94 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX4Q33E94 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX4Q33E94 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX4Q33E94 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RFX4Q33E94 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.19■□□□□ 0.02
RFX4Q33E94 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX4Q33E94 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX4Q33E94 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX4Q33E94 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC15.19■□□□□ 0.02
RFX4Q33E94 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX4Q33E94 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.19■□□□□ 0.02
RFX4Q33E94 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.19■□□□□ 0.02
RFX4Q33E94 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX4Q33E94 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.19■□□□□ 0.02
RFX4Q33E94 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX4Q33E94 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RFX4Q33E94 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC15.19■□□□□ 0.02
RFX4Q33E94 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX4Q33E94 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX4Q33E94 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX4Q33E94 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RFX4Q33E94 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC15.19■□□□□ 0.02
RFX4Q33E94 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX4Q33E94 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
RFX4Q33E94 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC15.19■□□□□ 0.02
RFX4Q33E94 AL139424.1-201ENST00000607572 797 ntBASIC15.19■□□□□ 0.02
RFX4Q33E94 AC091076.1-201ENST00000610741 619 ntBASIC15.19■□□□□ 0.02
RFX4Q33E94 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC15.19■□□□□ 0.02
RFX4Q33E94 AL139288.1-201ENST00000623748 933 ntBASIC15.19■□□□□ 0.02
RFX4Q33E94 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.19■□□□□ 0.02
RFX4Q33E94 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
RFX4Q33E94 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
RFX4Q33E94 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX4Q33E94 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.19■□□□□ 0.02
RFX4Q33E94 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX4Q33E94 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RFX4Q33E94 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC15.19■□□□□ 0.02
RFX4Q33E94 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RFX4Q33E94 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms