Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CHD3Q12873 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC14.02□□□□□ -0.16
CHD3Q12873 ALOX12P2-203ENST00000570921 1945 ntBASIC14.02□□□□□ -0.16
CHD3Q12873 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
CHD3Q12873 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC14.02□□□□□ -0.17
CHD3Q12873 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC14.02□□□□□ -0.17
CHD3Q12873 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC14.02□□□□□ -0.17
CHD3Q12873 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CHD3Q12873 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CHD3Q12873 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CHD3Q12873 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CHD3Q12873 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC14.02□□□□□ -0.17
CHD3Q12873 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
CHD3Q12873 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CHD3Q12873 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.02□□□□□ -0.17
CHD3Q12873 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
CHD3Q12873 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC14.02□□□□□ -0.17
CHD3Q12873 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC14.02□□□□□ -0.17
CHD3Q12873 MIR943-201ENST00000401286 94 ntBASIC14.02□□□□□ -0.17
CHD3Q12873 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CHD3Q12873 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC14.02□□□□□ -0.17
CHD3Q12873 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC14.02□□□□□ -0.17
CHD3Q12873 LINC01225-203ENST00000563550 1244 ntBASIC14.02□□□□□ -0.17
CHD3Q12873 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC14.02□□□□□ -0.17
CHD3Q12873 AL590560.3-201ENST00000623350 461 ntBASIC14.02□□□□□ -0.17
CHD3Q12873 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC14.02□□□□□ -0.17
CHD3Q12873 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CHD3Q12873 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CHD3Q12873 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHD3Q12873 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHD3Q12873 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
CHD3Q12873 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHD3Q12873 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CHD3Q12873 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHD3Q12873 MTHFR-217ENST00000641820 1569 ntBASIC14.01□□□□□ -0.17
CHD3Q12873 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHD3Q12873 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC14.01□□□□□ -0.17
CHD3Q12873 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHD3Q12873 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CHD3Q12873 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CHD3Q12873 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHD3Q12873 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHD3Q12873 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CHD3Q12873 COX5BP8-201ENST00000416911 349 ntBASIC14.01□□□□□ -0.17
CHD3Q12873 TREML5P-201ENST00000421694 576 ntBASIC14.01□□□□□ -0.17
CHD3Q12873 ATP5G2P4-201ENST00000442175 420 ntBASIC14.01□□□□□ -0.17
CHD3Q12873 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC14.01□□□□□ -0.17
CHD3Q12873 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC14.01□□□□□ -0.17
CHD3Q12873 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC14.01□□□□□ -0.17
CHD3Q12873 AL596325.1-201ENST00000563991 1082 ntBASIC14.01□□□□□ -0.17
CHD3Q12873 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CHD3Q12873 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC14.01□□□□□ -0.17
CHD3Q12873 AL512652.2-201ENST00000625156 1716 ntBASIC14.01□□□□□ -0.17
CHD3Q12873 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CHD3Q12873 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHD3Q12873 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CHD3Q12873 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHD3Q12873 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
CHD3Q12873 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHD3Q12873 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CHD3Q12873 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CHD3Q12873 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC14.01□□□□□ -0.17
CHD3Q12873 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHD3Q12873 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHD3Q12873 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC14.01□□□□□ -0.17
CHD3Q12873 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.01□□□□□ -0.17
CHD3Q12873 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC14.01□□□□□ -0.17
CHD3Q12873 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC14.01□□□□□ -0.17
CHD3Q12873 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC14□□□□□ -0.17
CHD3Q12873 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC14□□□□□ -0.17
CHD3Q12873 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CHD3Q12873 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CHD3Q12873 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CHD3Q12873 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
CHD3Q12873 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14□□□□□ -0.17
CHD3Q12873 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC14□□□□□ -0.17
CHD3Q12873 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC14□□□□□ -0.17
CHD3Q12873 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC14□□□□□ -0.17
CHD3Q12873 AC109635.5-201ENST00000533593 962 ntBASIC14□□□□□ -0.17
CHD3Q12873 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC14□□□□□ -0.17
CHD3Q12873 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC14□□□□□ -0.17
CHD3Q12873 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CHD3Q12873 NKG7-205ENST00000600427 520 ntTSL 3 BASIC14□□□□□ -0.17
CHD3Q12873 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC14□□□□□ -0.17
CHD3Q12873 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC14□□□□□ -0.17
CHD3Q12873 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CHD3Q12873 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CHD3Q12873 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC14□□□□□ -0.17
CHD3Q12873 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC14□□□□□ -0.17
CHD3Q12873 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC14□□□□□ -0.17
CHD3Q12873 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC14□□□□□ -0.17
CHD3Q12873 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC14□□□□□ -0.17
CHD3Q12873 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CHD3Q12873 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC14□□□□□ -0.17
CHD3Q12873 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC14□□□□□ -0.17
CHD3Q12873 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC14□□□□□ -0.17
CHD3Q12873 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
CHD3Q12873 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC14□□□□□ -0.17
CHD3Q12873 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC14□□□□□ -0.17
CHD3Q12873 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms