Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HMGCS2P54868 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
HMGCS2P54868 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HMGCS2P54868 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
HMGCS2P54868 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.62■□□□□ 0.57
HMGCS2P54868 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGCS2P54868 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC18.62■□□□□ 0.57
HMGCS2P54868 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGCS2P54868 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGCS2P54868 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC18.62■□□□□ 0.57
HMGCS2P54868 MPV17-208ENST00000405076 603 ntTSL 5 BASIC18.62■□□□□ 0.57
HMGCS2P54868 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HMGCS2P54868 RPL13P2-201ENST00000440687 659 ntBASIC18.62■□□□□ 0.57
HMGCS2P54868 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
HMGCS2P54868 AC092658.1-201ENST00000505836 891 ntBASIC18.62■□□□□ 0.57
HMGCS2P54868 USP32P1-208ENST00000506594 1164 ntBASIC18.62■□□□□ 0.57
HMGCS2P54868 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC18.62■□□□□ 0.57
HMGCS2P54868 AC036164.1-201ENST00000570544 333 ntBASIC18.62■□□□□ 0.57
HMGCS2P54868 PIGL-212ENST00000581006 554 ntTSL 4 BASIC18.62■□□□□ 0.57
HMGCS2P54868 BTNL10-201ENST00000595971 695 ntBASIC18.62■□□□□ 0.57
HMGCS2P54868 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC18.62■□□□□ 0.57
HMGCS2P54868 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC18.62■□□□□ 0.57
HMGCS2P54868 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
HMGCS2P54868 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
HMGCS2P54868 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGCS2P54868 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGCS2P54868 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC18.62■□□□□ 0.57
HMGCS2P54868 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HMGCS2P54868 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGCS2P54868 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGCS2P54868 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
HMGCS2P54868 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGCS2P54868 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HMGCS2P54868 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGCS2P54868 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGCS2P54868 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGCS2P54868 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGCS2P54868 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
HMGCS2P54868 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.61■□□□□ 0.57
HMGCS2P54868 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGCS2P54868 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
HMGCS2P54868 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
HMGCS2P54868 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGCS2P54868 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGCS2P54868 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGCS2P54868 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
HMGCS2P54868 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGCS2P54868 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGCS2P54868 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.61■□□□□ 0.57
HMGCS2P54868 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC18.61■□□□□ 0.57
HMGCS2P54868 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGCS2P54868 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC18.61■□□□□ 0.57
HMGCS2P54868 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC18.61■□□□□ 0.57
HMGCS2P54868 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC18.61■□□□□ 0.57
HMGCS2P54868 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGCS2P54868 KRT8P37-201ENST00000451609 1420 ntBASIC18.61■□□□□ 0.57
HMGCS2P54868 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC18.61■□□□□ 0.57
HMGCS2P54868 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGCS2P54868 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGCS2P54868 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC18.61■□□□□ 0.57
HMGCS2P54868 EEF1DP4-201ENST00000446006 880 ntBASIC18.61■□□□□ 0.57
HMGCS2P54868 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC18.61■□□□□ 0.57
HMGCS2P54868 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC18.61■□□□□ 0.57
HMGCS2P54868 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC18.61■□□□□ 0.57
HMGCS2P54868 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC18.61■□□□□ 0.57
HMGCS2P54868 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGCS2P54868 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC18.61■□□□□ 0.57
HMGCS2P54868 WNT11-204ENST00000621122 789 ntTSL 5 BASIC18.61■□□□□ 0.57
HMGCS2P54868 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGCS2P54868 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
HMGCS2P54868 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC18.61■□□□□ 0.57
HMGCS2P54868 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
HMGCS2P54868 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
HMGCS2P54868 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGCS2P54868 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC18.61■□□□□ 0.57
HMGCS2P54868 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
HMGCS2P54868 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGCS2P54868 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
HMGCS2P54868 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGCS2P54868 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC18.6■□□□□ 0.57
HMGCS2P54868 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGCS2P54868 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
HMGCS2P54868 GRN-214ENST00000589265 1632 ntTSL 5 BASIC18.6■□□□□ 0.57
HMGCS2P54868 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGCS2P54868 REXO1L6P-201ENST00000603433 1515 ntBASIC18.6■□□□□ 0.57
HMGCS2P54868 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGCS2P54868 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
HMGCS2P54868 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
HMGCS2P54868 AC074338.1-201ENST00000416825 156 ntBASIC18.6■□□□□ 0.57
HMGCS2P54868 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC18.6■□□□□ 0.57
HMGCS2P54868 POU5F1P6-201ENST00000466990 990 ntBASIC18.6■□□□□ 0.57
HMGCS2P54868 HNRNPA1P13-201ENST00000510646 963 ntBASIC18.6■□□□□ 0.57
HMGCS2P54868 AC243562.2-201ENST00000561247 970 ntBASIC18.6■□□□□ 0.57
HMGCS2P54868 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC18.6■□□□□ 0.57
HMGCS2P54868 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC18.6■□□□□ 0.57
HMGCS2P54868 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HMGCS2P54868 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGCS2P54868 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGCS2P54868 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HMGCS2P54868 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms