Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 AC025048.6-201ENST00000634326 1161 ntBASIC17.79■□□□□ 0.44
CLCN3P51790 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLCN3P51790 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.79■□□□□ 0.44
CLCN3P51790 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CLCN3P51790 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CLCN3P51790 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CLCN3P51790 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLCN3P51790 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.79■□□□□ 0.44
CLCN3P51790 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLCN3P51790 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
CLCN3P51790 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC17.79■□□□□ 0.44
CLCN3P51790 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC17.79■□□□□ 0.44
CLCN3P51790 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLCN3P51790 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CLCN3P51790 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLCN3P51790 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC17.79■□□□□ 0.44
CLCN3P51790 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLCN3P51790 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CLCN3P51790 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
CLCN3P51790 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLCN3P51790 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLCN3P51790 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.78■□□□□ 0.44
CLCN3P51790 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLCN3P51790 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CLCN3P51790 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.78■□□□□ 0.44
CLCN3P51790 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLCN3P51790 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC17.78■□□□□ 0.44
CLCN3P51790 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC17.78■□□□□ 0.44
CLCN3P51790 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLCN3P51790 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
CLCN3P51790 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.78■□□□□ 0.44
CLCN3P51790 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
CLCN3P51790 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLCN3P51790 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLCN3P51790 EDF1-203ENST00000371649 790 ntTSL 2 BASIC17.78■□□□□ 0.44
CLCN3P51790 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CLCN3P51790 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
CLCN3P51790 HIST3H2BA-201ENST00000436555 524 ntBASIC17.78■□□□□ 0.44
CLCN3P51790 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC17.78■□□□□ 0.44
CLCN3P51790 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC17.78■□□□□ 0.44
CLCN3P51790 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CLCN3P51790 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLCN3P51790 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLCN3P51790 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
CLCN3P51790 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLCN3P51790 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLCN3P51790 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLCN3P51790 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLCN3P51790 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLCN3P51790 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLCN3P51790 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC17.78■□□□□ 0.44
CLCN3P51790 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.78■□□□□ 0.44
CLCN3P51790 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLCN3P51790 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CLCN3P51790 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLCN3P51790 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.78■□□□□ 0.44
CLCN3P51790 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CLCN3P51790 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CLCN3P51790 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLCN3P51790 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLCN3P51790 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CLCN3P51790 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
CLCN3P51790 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CLCN3P51790 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLCN3P51790 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLCN3P51790 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLCN3P51790 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC17.77■□□□□ 0.44
CLCN3P51790 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLCN3P51790 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC17.77■□□□□ 0.44
CLCN3P51790 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLCN3P51790 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CLCN3P51790 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC17.77■□□□□ 0.44
CLCN3P51790 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLCN3P51790 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLCN3P51790 SPDYE19P-201ENST00000338590 713 ntBASIC17.77■□□□□ 0.44
CLCN3P51790 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
CLCN3P51790 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC17.77■□□□□ 0.44
CLCN3P51790 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CLCN3P51790 DOC2GP-202ENST00000514950 1163 ntBASIC17.77■□□□□ 0.44
CLCN3P51790 SDHAP3-202ENST00000515467 728 ntBASIC17.77■□□□□ 0.44
CLCN3P51790 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC17.77■□□□□ 0.44
CLCN3P51790 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC17.77■□□□□ 0.44
CLCN3P51790 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CLCN3P51790 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
CLCN3P51790 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC17.77■□□□□ 0.44
CLCN3P51790 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
CLCN3P51790 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CLCN3P51790 AC004461.2-201ENST00000629517 803 ntBASIC17.77■□□□□ 0.44
CLCN3P51790 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC17.77■□□□□ 0.44
CLCN3P51790 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.77■□□□□ 0.44
CLCN3P51790 AL691432.1-201ENST00000596308 1422 ntBASIC17.77■□□□□ 0.44
CLCN3P51790 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CLCN3P51790 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLCN3P51790 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
CLCN3P51790 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
CLCN3P51790 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CLCN3P51790 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CLCN3P51790 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
CLCN3P51790 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
CLCN3P51790 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms