Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL12P48061 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
CXCL12P48061 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL12P48061 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
CXCL12P48061 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
CXCL12P48061 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL12P48061 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL12P48061 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL12P48061 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL12P48061 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL12P48061 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.03■□□□□ 0.16
CXCL12P48061 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC16.03■□□□□ 0.16
CXCL12P48061 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC16.03■□□□□ 0.16
CXCL12P48061 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL12P48061 OR6D1P-203ENST00000641209 4860 ntBASIC16.03■□□□□ 0.16
CXCL12P48061 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
CXCL12P48061 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL12P48061 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL12P48061 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL12P48061 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL12P48061 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL12P48061 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC16.03■□□□□ 0.16
CXCL12P48061 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC16.03■□□□□ 0.16
CXCL12P48061 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL12P48061 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC16.03■□□□□ 0.16
CXCL12P48061 AC124283.3-201ENST00000570869 594 ntBASIC16.03■□□□□ 0.16
CXCL12P48061 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC16.03■□□□□ 0.16
CXCL12P48061 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
CXCL12P48061 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL12P48061 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL12P48061 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL12P48061 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
CXCL12P48061 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL12P48061 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL12P48061 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CXCL12P48061 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
CXCL12P48061 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.03■□□□□ 0.16
CXCL12P48061 KRT8P37-201ENST00000451609 1420 ntBASIC16.02■□□□□ 0.16
CXCL12P48061 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.02■□□□□ 0.16
CXCL12P48061 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.02■□□□□ 0.16
CXCL12P48061 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CXCL12P48061 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CXCL12P48061 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CXCL12P48061 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC16.02■□□□□ 0.16
CXCL12P48061 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
CXCL12P48061 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC16.02■□□□□ 0.16
CXCL12P48061 AC134312.5-201ENST00000568031 1313 ntBASIC16.02■□□□□ 0.16
CXCL12P48061 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CXCL12P48061 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CXCL12P48061 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.02■□□□□ 0.16
CXCL12P48061 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC16.02■□□□□ 0.16
CXCL12P48061 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CXCL12P48061 C1QBPP1-201ENST00000400117 770 ntBASIC16.02■□□□□ 0.16
CXCL12P48061 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC16.02■□□□□ 0.16
CXCL12P48061 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CXCL12P48061 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CXCL12P48061 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.02■□□□□ 0.16
CXCL12P48061 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC16.02■□□□□ 0.16
CXCL12P48061 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC16.02■□□□□ 0.16
CXCL12P48061 AC243562.2-201ENST00000561247 970 ntBASIC16.02■□□□□ 0.16
CXCL12P48061 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC16.02■□□□□ 0.16
CXCL12P48061 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC16.02■□□□□ 0.16
CXCL12P48061 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
CXCL12P48061 AC091271.1-201ENST00000611877 1162 ntBASIC16.02■□□□□ 0.16
CXCL12P48061 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC16.02■□□□□ 0.16
CXCL12P48061 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC16.02■□□□□ 0.16
CXCL12P48061 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.02■□□□□ 0.16
CXCL12P48061 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CXCL12P48061 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.02■□□□□ 0.16
CXCL12P48061 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CXCL12P48061 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CXCL12P48061 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CXCL12P48061 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
CXCL12P48061 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
CXCL12P48061 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CXCL12P48061 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
CXCL12P48061 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CXCL12P48061 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CXCL12P48061 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.02■□□□□ 0.15
CXCL12P48061 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
CXCL12P48061 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
CXCL12P48061 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CXCL12P48061 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
CXCL12P48061 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CXCL12P48061 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.01■□□□□ 0.15
CXCL12P48061 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
CXCL12P48061 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CXCL12P48061 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CXCL12P48061 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CXCL12P48061 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CXCL12P48061 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CXCL12P48061 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CXCL12P48061 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
CXCL12P48061 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CXCL12P48061 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CXCL12P48061 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
CXCL12P48061 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CXCL12P48061 AC092506.1-202ENST00000401022 528 ntBASIC16.01■□□□□ 0.15
CXCL12P48061 MPV17-206ENST00000402722 827 ntTSL 3 BASIC16.01■□□□□ 0.15
CXCL12P48061 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms