Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
SCN4AP35499 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SCN4AP35499 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC18.83■□□□□ 0.6
SCN4AP35499 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
SCN4AP35499 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC18.83■□□□□ 0.6
SCN4AP35499 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC18.83■□□□□ 0.6
SCN4AP35499 GGT3P-204ENST00000453783 1664 ntBASIC18.83■□□□□ 0.6
SCN4AP35499 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.83■□□□□ 0.6
SCN4AP35499 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SCN4AP35499 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SCN4AP35499 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
SCN4AP35499 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SCN4AP35499 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SCN4AP35499 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SCN4AP35499 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
SCN4AP35499 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SCN4AP35499 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SCN4AP35499 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
SCN4AP35499 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SCN4AP35499 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC18.82■□□□□ 0.6
SCN4AP35499 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC18.82■□□□□ 0.6
SCN4AP35499 KLK11-210ENST00000600362 759 ntTSL 3 BASIC18.82■□□□□ 0.6
SCN4AP35499 AC091544.8-201ENST00000619490 361 ntBASIC18.82■□□□□ 0.6
SCN4AP35499 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
SCN4AP35499 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC18.82■□□□□ 0.6
SCN4AP35499 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SCN4AP35499 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC18.82■□□□□ 0.6
SCN4AP35499 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SCN4AP35499 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.82■□□□□ 0.6
SCN4AP35499 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.82■□□□□ 0.6
SCN4AP35499 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
SCN4AP35499 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SCN4AP35499 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SCN4AP35499 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
SCN4AP35499 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SCN4AP35499 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SCN4AP35499 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SCN4AP35499 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC18.81■□□□□ 0.6
SCN4AP35499 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.81■□□□□ 0.6
SCN4AP35499 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SCN4AP35499 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SCN4AP35499 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC18.81■□□□□ 0.6
SCN4AP35499 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC18.81■□□□□ 0.6
SCN4AP35499 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SCN4AP35499 AC022217.1-201ENST00000521069 738 ntBASIC18.81■□□□□ 0.6
SCN4AP35499 CFL1-214ENST00000534769 758 ntTSL 2 BASIC18.81■□□□□ 0.6
SCN4AP35499 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC18.81■□□□□ 0.6
SCN4AP35499 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SCN4AP35499 CU633904.3-201ENST00000624042 1029 ntBASIC18.81■□□□□ 0.6
SCN4AP35499 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC18.81■□□□□ 0.6
SCN4AP35499 PKD1P6-201ENST00000343738 4769 ntBASIC18.81■□□□□ 0.6
SCN4AP35499 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SCN4AP35499 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SCN4AP35499 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
SCN4AP35499 NOC2LP2-201ENST00000407594 1944 ntBASIC18.81■□□□□ 0.6
SCN4AP35499 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SCN4AP35499 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SCN4AP35499 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SCN4AP35499 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC18.81■□□□□ 0.6
SCN4AP35499 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC18.81■□□□□ 0.6
SCN4AP35499 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SCN4AP35499 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SCN4AP35499 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC18.81■□□□□ 0.6
SCN4AP35499 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC18.81■□□□□ 0.6
SCN4AP35499 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SCN4AP35499 TISP43-201ENST00000409793 538 ntTSL 4 BASIC18.81■□□□□ 0.6
SCN4AP35499 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC18.81■□□□□ 0.6
SCN4AP35499 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
SCN4AP35499 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC18.81■□□□□ 0.6
SCN4AP35499 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
SCN4AP35499 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC18.81■□□□□ 0.6
SCN4AP35499 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SCN4AP35499 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC18.81■□□□□ 0.6
SCN4AP35499 AP000346.4-201ENST00000614827 381 ntBASIC18.81■□□□□ 0.6
SCN4AP35499 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SCN4AP35499 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
SCN4AP35499 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC18.81■□□□□ 0.6
SCN4AP35499 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SCN4AP35499 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SCN4AP35499 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC18.8■□□□□ 0.6
SCN4AP35499 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SCN4AP35499 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SCN4AP35499 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SCN4AP35499 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SCN4AP35499 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SCN4AP35499 AL023775.1-201ENST00000454907 1746 ntBASIC18.8■□□□□ 0.6
SCN4AP35499 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SCN4AP35499 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.8■□□□□ 0.6
SCN4AP35499 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SCN4AP35499 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
SCN4AP35499 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC18.8■□□□□ 0.6
SCN4AP35499 UFM1-202ENST00000379649 846 ntTSL 4 BASIC18.8■□□□□ 0.6
SCN4AP35499 AL133267.1-201ENST00000398220 340 ntBASIC18.8■□□□□ 0.6
SCN4AP35499 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC18.8■□□□□ 0.6
SCN4AP35499 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC18.8■□□□□ 0.6
SCN4AP35499 CMC2-214ENST00000565925 640 ntTSL 5 BASIC18.8■□□□□ 0.6
SCN4AP35499 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC18.8■□□□□ 0.6
SCN4AP35499 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SCN4AP35499 TP73-209ENST00000603362 1668 ntTSL 5 BASIC18.8■□□□□ 0.6
SCN4AP35499 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms