Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC22.43■■□□□ 1.18
NPHP4O75161 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
NPHP4O75161 AP005019.2-201ENST00000615104 511 ntBASIC22.43■■□□□ 1.18
NPHP4O75161 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
NPHP4O75161 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
NPHP4O75161 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
NPHP4O75161 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
NPHP4O75161 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC22.43■■□□□ 1.18
NPHP4O75161 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
NPHP4O75161 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
NPHP4O75161 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
NPHP4O75161 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
NPHP4O75161 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
NPHP4O75161 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
NPHP4O75161 CD276-201ENST00000318424 2738 ntTSL 5 BASIC22.43■■□□□ 1.18
NPHP4O75161 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
NPHP4O75161 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
NPHP4O75161 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
NPHP4O75161 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
NPHP4O75161 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
NPHP4O75161 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC22.42■■□□□ 1.18
NPHP4O75161 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC22.42■■□□□ 1.18
NPHP4O75161 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC22.42■■□□□ 1.18
NPHP4O75161 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
NPHP4O75161 AC136604.1-201ENST00000418535 575 ntBASIC22.42■■□□□ 1.18
NPHP4O75161 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC22.42■■□□□ 1.18
NPHP4O75161 AL133466.1-201ENST00000447582 150 ntBASIC22.42■■□□□ 1.18
NPHP4O75161 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC22.42■■□□□ 1.18
NPHP4O75161 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC22.42■■□□□ 1.18
NPHP4O75161 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC22.42■■□□□ 1.18
NPHP4O75161 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC22.42■■□□□ 1.18
NPHP4O75161 RN7SL574P-201ENST00000581512 297 ntBASIC22.42■■□□□ 1.18
NPHP4O75161 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC22.42■■□□□ 1.18
NPHP4O75161 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
NPHP4O75161 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC22.42■■□□□ 1.18
NPHP4O75161 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC22.42■■□□□ 1.18
NPHP4O75161 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC22.42■■□□□ 1.18
NPHP4O75161 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC22.42■■□□□ 1.18
NPHP4O75161 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC22.42■■□□□ 1.18
NPHP4O75161 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC22.42■■□□□ 1.18
NPHP4O75161 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC22.42■■□□□ 1.18
NPHP4O75161 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC22.42■■□□□ 1.18
NPHP4O75161 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC22.42■■□□□ 1.18
NPHP4O75161 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
NPHP4O75161 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
NPHP4O75161 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC22.42■■□□□ 1.18
NPHP4O75161 AMT-206ENST00000458307 1860 ntTSL 2 BASIC22.41■■□□□ 1.18
NPHP4O75161 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
NPHP4O75161 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
NPHP4O75161 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC22.41■■□□□ 1.18
NPHP4O75161 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
NPHP4O75161 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
NPHP4O75161 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
NPHP4O75161 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
NPHP4O75161 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
NPHP4O75161 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
NPHP4O75161 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC22.41■■□□□ 1.18
NPHP4O75161 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
NPHP4O75161 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC22.41■■□□□ 1.18
NPHP4O75161 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
NPHP4O75161 LINC01144-201ENST00000626198 1710 ntBASIC22.41■■□□□ 1.18
NPHP4O75161 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC22.41■■□□□ 1.18
NPHP4O75161 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC22.41■■□□□ 1.18
NPHP4O75161 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC22.41■■□□□ 1.18
NPHP4O75161 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
NPHP4O75161 FOS-202ENST00000535987 1402 ntTSL 2 BASIC22.41■■□□□ 1.18
NPHP4O75161 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC22.41■■□□□ 1.18
NPHP4O75161 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC22.41■■□□□ 1.18
NPHP4O75161 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC22.41■■□□□ 1.18
NPHP4O75161 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
NPHP4O75161 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC22.4■■□□□ 1.18
NPHP4O75161 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC22.4■■□□□ 1.18
NPHP4O75161 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC22.4■■□□□ 1.18
NPHP4O75161 NKAIN1P1-201ENST00000435754 582 ntBASIC22.4■■□□□ 1.18
NPHP4O75161 ATP6V0CP2-201ENST00000469409 207 ntBASIC22.4■■□□□ 1.18
NPHP4O75161 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC22.4■■□□□ 1.18
NPHP4O75161 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC22.4■■□□□ 1.18
NPHP4O75161 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC22.4■■□□□ 1.18
NPHP4O75161 ECM1P1-201ENST00000604092 1279 ntBASIC22.4■■□□□ 1.18
NPHP4O75161 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
NPHP4O75161 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC22.4■■□□□ 1.18
NPHP4O75161 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
NPHP4O75161 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
NPHP4O75161 AC008764.6-201ENST00000595909 2069 ntBASIC22.4■■□□□ 1.18
NPHP4O75161 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC22.4■■□□□ 1.18
NPHP4O75161 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
NPHP4O75161 KRT8P35-201ENST00000483942 1338 ntBASIC22.4■■□□□ 1.18
NPHP4O75161 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
NPHP4O75161 GNE-204ENST00000539208 2190 ntTSL 2 BASIC22.4■■□□□ 1.18
NPHP4O75161 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
NPHP4O75161 AL023775.1-201ENST00000454907 1746 ntBASIC22.4■■□□□ 1.18
NPHP4O75161 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
NPHP4O75161 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
NPHP4O75161 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC22.4■■□□□ 1.18
NPHP4O75161 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
NPHP4O75161 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC22.4■■□□□ 1.18
NPHP4O75161 COX5BP1-201ENST00000507622 393 ntBASIC22.4■■□□□ 1.18
NPHP4O75161 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
NPHP4O75161 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
NPHP4O75161 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms