Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AC005336.2-201ENST00000593183 939 ntBASIC16.32■□□□□ 0.2
SHOX2O60902 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SHOX2O60902 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SHOX2O60902 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SHOX2O60902 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SHOX2O60902 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SHOX2O60902 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
SHOX2O60902 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SHOX2O60902 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
SHOX2O60902 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC16.31■□□□□ 0.2
SHOX2O60902 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHOX2O60902 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHOX2O60902 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.31■□□□□ 0.2
SHOX2O60902 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHOX2O60902 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SHOX2O60902 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHOX2O60902 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC16.31■□□□□ 0.2
SHOX2O60902 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHOX2O60902 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHOX2O60902 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHOX2O60902 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC16.31■□□□□ 0.2
SHOX2O60902 AC092597.1-201ENST00000487352 616 ntBASIC16.31■□□□□ 0.2
SHOX2O60902 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SHOX2O60902 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.31■□□□□ 0.2
SHOX2O60902 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHOX2O60902 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.31■□□□□ 0.2
SHOX2O60902 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.31■□□□□ 0.2
SHOX2O60902 AL390719.2-201ENST00000606993 987 ntBASIC16.31■□□□□ 0.2
SHOX2O60902 AL353801.3-201ENST00000609898 542 ntBASIC16.31■□□□□ 0.2
SHOX2O60902 AC020765.3-201ENST00000613051 740 ntBASIC16.31■□□□□ 0.2
SHOX2O60902 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.31■□□□□ 0.2
SHOX2O60902 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC16.31■□□□□ 0.2
SHOX2O60902 AC027601.5-201ENST00000624065 2482 ntBASIC16.31■□□□□ 0.2
SHOX2O60902 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHOX2O60902 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHOX2O60902 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHOX2O60902 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHOX2O60902 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC16.31■□□□□ 0.2
SHOX2O60902 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHOX2O60902 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHOX2O60902 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SHOX2O60902 CICP20-201ENST00000443330 2801 ntBASIC16.31■□□□□ 0.2
SHOX2O60902 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
SHOX2O60902 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC16.31■□□□□ 0.2
SHOX2O60902 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHOX2O60902 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.31■□□□□ 0.2
SHOX2O60902 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHOX2O60902 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.3■□□□□ 0.2
SHOX2O60902 AC148477.5-201ENST00000625164 1645 ntBASIC16.3■□□□□ 0.2
SHOX2O60902 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC16.3■□□□□ 0.2
SHOX2O60902 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SHOX2O60902 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC16.3■□□□□ 0.2
SHOX2O60902 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHOX2O60902 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SHOX2O60902 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHOX2O60902 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHOX2O60902 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHOX2O60902 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SHOX2O60902 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHOX2O60902 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHOX2O60902 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC16.3■□□□□ 0.2
SHOX2O60902 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHOX2O60902 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHOX2O60902 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SHOX2O60902 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SHOX2O60902 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SHOX2O60902 TKT-201ENST00000296289 1931 ntTSL 5 BASIC16.3■□□□□ 0.2
SHOX2O60902 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SHOX2O60902 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
SHOX2O60902 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC16.3■□□□□ 0.2
SHOX2O60902 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.3■□□□□ 0.2
SHOX2O60902 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHOX2O60902 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SHOX2O60902 MIR662-201ENST00000384847 95 ntBASIC16.3■□□□□ 0.2
SHOX2O60902 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC16.3■□□□□ 0.2
SHOX2O60902 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.3■□□□□ 0.2
SHOX2O60902 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC16.3■□□□□ 0.2
SHOX2O60902 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHOX2O60902 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SHOX2O60902 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SHOX2O60902 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHOX2O60902 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
SHOX2O60902 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SHOX2O60902 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHOX2O60902 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
SHOX2O60902 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC16.3■□□□□ 0.2
SHOX2O60902 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SHOX2O60902 AC005622.1-201ENST00000636801 1703 ntBASIC16.3■□□□□ 0.2
SHOX2O60902 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHOX2O60902 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC16.3■□□□□ 0.2
SHOX2O60902 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.3■□□□□ 0.2
SHOX2O60902 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SHOX2O60902 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC16.3■□□□□ 0.2
SHOX2O60902 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHOX2O60902 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHOX2O60902 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHOX2O60902 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHOX2O60902 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHOX2O60902 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC16.29■□□□□ 0.2
SHOX2O60902 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms