Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PRKNO60260 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
PRKNO60260 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.15■□□□□ 0.02
PRKNO60260 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PRKNO60260 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
PRKNO60260 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.15■□□□□ 0.02
PRKNO60260 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PRKNO60260 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PRKNO60260 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PRKNO60260 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PRKNO60260 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC15.15■□□□□ 0.02
PRKNO60260 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PRKNO60260 TUBB3P1-201ENST00000405796 1332 ntBASIC15.15■□□□□ 0.02
PRKNO60260 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PRKNO60260 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PRKNO60260 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PRKNO60260 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC15.14■□□□□ 0.01
PRKNO60260 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC15.14■□□□□ 0.01
PRKNO60260 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PRKNO60260 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PRKNO60260 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
PRKNO60260 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC15.14■□□□□ 0.01
PRKNO60260 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PRKNO60260 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PRKNO60260 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC15.14■□□□□ 0.01
PRKNO60260 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
PRKNO60260 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PRKNO60260 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.14■□□□□ 0.01
PRKNO60260 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PRKNO60260 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PRKNO60260 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PRKNO60260 FAM220BP-201ENST00000377689 816 ntBASIC15.14■□□□□ 0.01
PRKNO60260 HLA-H-201ENST00000383620 1096 ntBASIC15.14■□□□□ 0.01
PRKNO60260 HMGN1P19-201ENST00000436976 333 ntBASIC15.14■□□□□ 0.01
PRKNO60260 CNN2P2-201ENST00000443536 909 ntBASIC15.14■□□□□ 0.01
PRKNO60260 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC15.14■□□□□ 0.01
PRKNO60260 CNN2P3-201ENST00000450201 906 ntBASIC15.14■□□□□ 0.01
PRKNO60260 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.14■□□□□ 0.01
PRKNO60260 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC15.14■□□□□ 0.01
PRKNO60260 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC15.14■□□□□ 0.01
PRKNO60260 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.14■□□□□ 0.01
PRKNO60260 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PRKNO60260 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.14■□□□□ 0.01
PRKNO60260 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC15.14■□□□□ 0.01
PRKNO60260 AC018529.1-201ENST00000613063 361 ntBASIC15.14■□□□□ 0.01
PRKNO60260 AL136317.3-201ENST00000618497 906 ntBASIC15.14■□□□□ 0.01
PRKNO60260 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PRKNO60260 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
PRKNO60260 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PRKNO60260 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
PRKNO60260 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PRKNO60260 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PRKNO60260 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.14■□□□□ 0.01
PRKNO60260 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
PRKNO60260 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PRKNO60260 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
PRKNO60260 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.13■□□□□ 0.01
PRKNO60260 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PRKNO60260 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
PRKNO60260 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
PRKNO60260 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PRKNO60260 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
PRKNO60260 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PRKNO60260 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PRKNO60260 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PRKNO60260 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PRKNO60260 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
PRKNO60260 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PRKNO60260 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
PRKNO60260 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PRKNO60260 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
PRKNO60260 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC15.13■□□□□ 0.01
PRKNO60260 RNA5SP410-201ENST00000516285 106 ntBASIC15.13■□□□□ 0.01
PRKNO60260 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC15.13■□□□□ 0.01
PRKNO60260 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC15.13■□□□□ 0.01
PRKNO60260 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC15.13■□□□□ 0.01
PRKNO60260 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC15.13■□□□□ 0.01
PRKNO60260 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.13■□□□□ 0.01
PRKNO60260 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PRKNO60260 AL390955.2-201ENST00000603032 514 ntBASIC15.13■□□□□ 0.01
PRKNO60260 AC018695.7-201ENST00000624587 2492 ntBASIC15.13■□□□□ 0.01
PRKNO60260 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC15.13■□□□□ 0.01
PRKNO60260 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PRKNO60260 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
PRKNO60260 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PRKNO60260 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
PRKNO60260 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC15.13■□□□□ 0.01
PRKNO60260 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
PRKNO60260 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PRKNO60260 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PRKNO60260 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PRKNO60260 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
PRKNO60260 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PRKNO60260 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PRKNO60260 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PRKNO60260 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
PRKNO60260 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
PRKNO60260 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PRKNO60260 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PRKNO60260 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms