Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC3O15379 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.88■□□□□ 0.13
HDAC3O15379 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC15.88■□□□□ 0.13
HDAC3O15379 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC15.88■□□□□ 0.13
HDAC3O15379 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC3O15379 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC15.88■□□□□ 0.13
HDAC3O15379 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.88■□□□□ 0.13
HDAC3O15379 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.87■□□□□ 0.13
HDAC3O15379 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
HDAC3O15379 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
HDAC3O15379 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC15.87■□□□□ 0.13
HDAC3O15379 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.87■□□□□ 0.13
HDAC3O15379 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC15.87■□□□□ 0.13
HDAC3O15379 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.87■□□□□ 0.13
HDAC3O15379 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 HAUS4P1-201ENST00000406739 1145 ntBASIC15.87■□□□□ 0.13
HDAC3O15379 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC15.87■□□□□ 0.13
HDAC3O15379 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
HDAC3O15379 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC15.87■□□□□ 0.13
HDAC3O15379 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC15.87■□□□□ 0.13
HDAC3O15379 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 AC021097.1-201ENST00000607902 574 ntBASIC15.87■□□□□ 0.13
HDAC3O15379 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC15.87■□□□□ 0.13
HDAC3O15379 AC107918.4-202ENST00000641623 219 ntBASIC15.87■□□□□ 0.13
HDAC3O15379 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15.87■□□□□ 0.13
HDAC3O15379 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.87■□□□□ 0.13
HDAC3O15379 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 PKD1P5-201ENST00000532415 10291 ntBASIC15.87■□□□□ 0.13
HDAC3O15379 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC15.87■□□□□ 0.13
HDAC3O15379 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.87■□□□□ 0.13
HDAC3O15379 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HDAC3O15379 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC15.87■□□□□ 0.13
HDAC3O15379 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC15.87■□□□□ 0.13
HDAC3O15379 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC15.86■□□□□ 0.13
HDAC3O15379 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.86■□□□□ 0.13
HDAC3O15379 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HDAC3O15379 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
HDAC3O15379 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HDAC3O15379 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
HDAC3O15379 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HDAC3O15379 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HDAC3O15379 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
HDAC3O15379 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HDAC3O15379 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
HDAC3O15379 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HDAC3O15379 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
HDAC3O15379 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HDAC3O15379 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HDAC3O15379 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.86■□□□□ 0.13
HDAC3O15379 RAB17-203ENST00000409576 466 ntTSL 3 BASIC15.86■□□□□ 0.13
HDAC3O15379 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC15.86■□□□□ 0.13
HDAC3O15379 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC15.86■□□□□ 0.13
HDAC3O15379 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC15.86■□□□□ 0.13
HDAC3O15379 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
HDAC3O15379 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HDAC3O15379 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
HDAC3O15379 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.86■□□□□ 0.13
HDAC3O15379 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HDAC3O15379 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HDAC3O15379 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HDAC3O15379 AC067930.6-201ENST00000623257 4947 ntBASIC15.86■□□□□ 0.13
HDAC3O15379 CICP13-201ENST00000422015 2789 ntBASIC15.86■□□□□ 0.13
HDAC3O15379 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.86■□□□□ 0.13
HDAC3O15379 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HDAC3O15379 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
HDAC3O15379 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
HDAC3O15379 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HDAC3O15379 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
HDAC3O15379 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HDAC3O15379 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.85■□□□□ 0.13
HDAC3O15379 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
HDAC3O15379 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HDAC3O15379 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HDAC3O15379 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HDAC3O15379 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC15.85■□□□□ 0.13
HDAC3O15379 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms